nsv827894
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,434
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 438 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 438 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 129 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv827894 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nsv827894 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nsv827894 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1422843 | copy number loss | NA18547 | Oligo aCGH | Probe signal intensity | 656 |
| nssv1423002 | copy number loss | NA18552 | Oligo aCGH | Probe signal intensity | 610 |
| nssv1423818 | copy number loss | NA18999 | Oligo aCGH | Probe signal intensity | 674 |
| nssv1424613 | copy number loss | NA18582 | Oligo aCGH | Probe signal intensity | 637 |
| nssv1426188 | copy number loss | AK4 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1430730 | copy number loss | NA18947 | Oligo aCGH | Probe signal intensity | 653 |
| nssv1430967 | copy number loss | AK16 | Oligo aCGH | Probe signal intensity | 590 |
| nssv1431698 | copy number loss | AK18 | Oligo aCGH | Probe signal intensity | 628 |
| nssv1432495 | copy number loss | AK20 | Oligo aCGH | Probe signal intensity | 768 |
| nssv1436463 | copy number loss | NA18592 | Oligo aCGH | Probe signal intensity | 636 |
| nssv1440704 | copy number loss | NA18564 | Oligo aCGH | Probe signal intensity | 612 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1422843 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1423002 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1423818 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1424613 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1426188 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1430730 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1430967 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1431698 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1432495 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1436463 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1440704 | Remapped | Perfect | NC_000017.11:g.(?_ 15140994)_(1515542 7_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 15,140,994 | 15,155,427 |
| nssv1422843 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1423002 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1423818 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1424613 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1426188 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1430730 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1430967 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1431698 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1432495 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1436463 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1440704 | Remapped | Perfect | NC_000017.10:g.(?_ 15044311)_(1505874 4_?)del | GRCh37.p13 | First Pass | NC_000017.10 | Chr17 | 15,044,311 | 15,058,744 |
| nssv1422843 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1423002 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1423818 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1424613 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1426188 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1430730 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1430967 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1431698 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1432495 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1436463 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 | ||
| nssv1440704 | Submitted genomic | NC_000017.9:g.(?_1 4985036)_(14999469 _?)del | NCBI36 (hg18) | NC_000017.9 | Chr17 | 14,985,036 | 14,999,469 |