nsv829624
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:327,982
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 667 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 667 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 150 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv829624 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 114,034,368 | 114,362,349 |
| nsv829624 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 114,791,945 | 115,119,926 |
| nsv829624 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 114,508,415 | 114,836,396 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1431906 | copy number loss | AK20 | Oligo aCGH | Probe signal intensity | 768 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1431906 | Remapped | Perfect | NC_000002.12:g.(?_ 114034368)_(114362 349_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,034,368 | 114,362,349 |
| nssv1431906 | Remapped | Perfect | NC_000002.11:g.(?_ 114791945)_(115119 926_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 114,791,945 | 115,119,926 |
| nssv1431906 | Submitted genomic | NC_000002.10:g.(?_ 114508415)_(114836 396_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 114,508,415 | 114,836,396 |