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dbVar

Database of genomic structural variation

nsv870011

Organism: Homo sapiens

Study:nstd53 (Tuttelmann et al. 2011)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:207,995

Publication(s):Tüttelmann et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1311 SVs from 95 studies. See in: genome view

Remapped(Score: Good):145,616,358-145,824,352

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv870011	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	145,616,358	145,616,358	145,824,352	145,824,352
nsv870011	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	145,610,761	145,610,940	145,799,602	145,818,702
nsv870011	Remapped	Good	GRCh37.p13	PATCHES	Second Pass	NW_003871055.3	Chr1\|NW_00 3871055.3	2,431,771	2,431,771	2,639,765	2,639,765
nsv870011	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	144,322,118	144,322,297	144,510,959	144,530,059

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1497586	copy number gain	SCOS_29	Oligo aCGH	Probe signal intensity	16
nssv1498589	copy number gain	CONTROL_15	Oligo aCGH	Probe signal intensity	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1497586	Remapped	Good	NC_000001.11:g.(14 5603733_145603733) _(145838156_145838 156)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	145,603,733	145,603,733	145,838,156	145,838,156
nssv1498589	Remapped	Good	NC_000001.11:g.(14 5616358_145616358) _(145824352_145824 352)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	145,616,358	145,616,358	145,824,352	145,824,352
nssv1497586	Remapped	Good	NW_003871055.3:g.( 2419146_2419146)_( 2653569_2653569)du p	GRCh37.p13	Second Pass	NW_003871055.3	Chr1\|NW_00 3871055.3	2,419,146	2,419,146	2,653,569	2,653,569
nssv1498589	Remapped	Good	NW_003871055.3:g.( 2431771_2431771)_( 2639765_2639765)du p	GRCh37.p13	Second Pass	NW_003871055.3	Chr1\|NW_00 3871055.3	2,431,771	2,431,771	2,639,765	2,639,765
nssv1497586	Remapped	Perfect	NC_000001.10:g.(14 5596954_145601454) _(145818761_145831 330)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	145,596,954	145,601,454	145,818,761	145,831,330
nssv1498589	Remapped	Perfect	NC_000001.10:g.(14 5610761_145610940) _(145799602_145818 702)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	145,610,761	145,610,940	145,799,602	145,818,702
nssv1497586	Submitted genomic		NC_000001.9:g.(144 308311_144312811)_ (144530118_1445426 87)dup	NCBI36 (hg18)		NC_000001.9	Chr1	144,308,311	144,312,811	144,530,118	144,542,687
nssv1498589	Submitted genomic		NC_000001.9:g.(144 322118_144322297)_ (144510959_1445300 59)dup	NCBI36 (hg18)		NC_000001.9	Chr1	144,322,118	144,322,297	144,510,959	144,530,059

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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