nsv870034
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,260,813
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 8636 SVs from 130 studies. See in: genome view
Overlapping variant regions from other studies: 6029 SVs from 125 studies. See in: genome view
Overlapping variant regions from other studies: 4978 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 2851 SVs from 37 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870034 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 45,662,767 | 45,662,767 | 47,923,579 | - |
| nsv870034 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 46,158,215 | 46,158,215 | 47,702,528 | 47,702,528 |
| nsv870034 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | - | 1 | 2,010,264 | - |
| nsv870034 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 45,478,221 | 45,478,333 | 47,165,895 | 47,172,534 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1496995 | copy number gain | OAT_71 | Oligo aCGH | Probe signal intensity | 13 |
| nssv1498430 | copy number gain | SCOS_23 | Oligo aCGH | Probe signal intensity | 14 |
| nssv1497618 | copy number gain | OAT_33 | Oligo aCGH | Probe signal intensity | 22 |
| nssv1498258 | copy number gain | OAT_04 | Oligo aCGH | Probe signal intensity | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1496995 | Remapped | Pass | NC_000010.11:g.(45 658771_45658771)_( 47923579_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,658,771 | 45,658,771 | 47,923,579 | - |
| nssv1498430 | Remapped | Pass | NC_000010.11:g.(45 658771_45658771)_( 47923579_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,658,771 | 45,658,771 | 47,923,579 | - |
| nssv1497618 | Remapped | Pass | NC_000010.11:g.(45 662767_45662767)_( 47923579_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,662,767 | 45,662,767 | 47,923,579 | - |
| nssv1498258 | Remapped | Pass | NC_000010.11:g.(45 662767_45662767)_( 47923579_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 45,662,767 | 45,662,767 | 47,923,579 | - |
| nssv1496995 | Remapped | Pass | NW_003871068.1:g.( ?_1)_(2010264_?)du p | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | - | 1 | 2,010,264 | - |
| nssv1497618 | Remapped | Pass | NW_003871068.1:g.( ?_1)_(2010264_?)du p | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | - | 1 | 2,010,264 | - |
| nssv1498258 | Remapped | Pass | NW_003871068.1:g.( ?_1)_(2010264_?)du p | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | - | 1 | 2,010,264 | - |
| nssv1498430 | Remapped | Pass | NW_003871068.1:g.( ?_1)_(2010264_?)du p | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | - | 1 | 2,010,264 | - |
| nssv1496995 | Remapped | Pass | NC_000010.10:g.(46 154219_46154219)_( 47702528_47702528) dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 46,154,219 | 46,154,219 | 47,702,528 | 47,702,528 |
| nssv1498430 | Remapped | Pass | NC_000010.10:g.(46 154219_46154219)_( 48055707_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 46,154,219 | 46,154,219 | 48,055,707 | - |
| nssv1498258 | Remapped | Pass | NC_000010.10:g.(46 158215_46158215)_( 47702528_47702528) dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 46,158,215 | 46,158,215 | 47,702,528 | 47,702,528 |
| nssv1497618 | Remapped | Pass | NC_000010.10:g.(46 158215_46158215)_( 48055707_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 46,158,215 | 46,158,215 | 48,055,707 | - |
| nssv1496995 | Submitted genomic | NC_000010.9:g.(454 74225_45478103)_(4 7165895_47172534)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 45,474,225 | 45,478,103 | 47,165,895 | 47,172,534 | ||
| nssv1498430 | Submitted genomic | NC_000010.9:g.(454 74225_45478103)_(4 7172593_47946216)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 45,474,225 | 45,478,103 | 47,172,593 | 47,946,216 | ||
| nssv1498258 | Submitted genomic | NC_000010.9:g.(454 78221_45478333)_(4 7165895_47172534)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 45,478,221 | 45,478,333 | 47,165,895 | 47,172,534 | ||
| nssv1497618 | Submitted genomic | NC_000010.9:g.(454 78221_45478333)_(4 7172593_47946216)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 45,478,221 | 45,478,333 | 47,172,593 | 47,946,216 |