nsv870386
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:24
- Validation:Not tested
- Clinical Assertions: No
- Region Size:28,063
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 795 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 795 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 450 SVs from 29 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv870386 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nsv870386 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nsv870386 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1495847 | copy number gain | CONTROL_50 | Oligo aCGH | Probe signal intensity | 19 |
nssv1495910 | copy number gain | CONTROL_85 | Oligo aCGH | Probe signal intensity | 19 |
nssv1496293 | copy number gain | CONTROL_57 | Oligo aCGH | Probe signal intensity | 24 |
nssv1496495 | copy number gain | CONTROL_60 | Oligo aCGH | Probe signal intensity | 14 |
nssv1496563 | copy number gain | OAT_17 | Oligo aCGH | Probe signal intensity | 27 |
nssv1496886 | copy number gain | CONTROL_56 | Oligo aCGH | Probe signal intensity | 33 |
nssv1497010 | copy number gain | OAT_22 | Oligo aCGH | Probe signal intensity | 19 |
nssv1497038 | copy number gain | CONTROL_48 | Oligo aCGH | Probe signal intensity | 19 |
nssv1497114 | copy number gain | CONTROL_72 | Oligo aCGH | Probe signal intensity | 18 |
nssv1497241 | copy number gain | SCOS_27 | Oligo aCGH | Probe signal intensity | 25 |
nssv1497242 | copy number gain | OAT_26 | Oligo aCGH | Probe signal intensity | 23 |
nssv1497433 | copy number gain | OAT_19 | Oligo aCGH | Probe signal intensity | 28 |
nssv1497515 | copy number gain | CONTROL_63 | Oligo aCGH | Probe signal intensity | 21 |
nssv1497574 | copy number gain | CONTROL_67 | Oligo aCGH | Probe signal intensity | 18 |
nssv1497619 | copy number loss | CONTROL_83 | Oligo aCGH | Probe signal intensity | 31 |
nssv1497775 | copy number gain | CONTROL_70 | Oligo aCGH | Probe signal intensity | 19 |
nssv1498073 | copy number gain | SCOS_11 | Oligo aCGH | Probe signal intensity | 28 |
nssv1498184 | copy number loss | OAT_80 | Oligo aCGH | Probe signal intensity | 9 |
nssv1498202 | copy number gain | OAT_67 | Oligo aCGH | Probe signal intensity | 20 |
nssv1498269 | copy number gain | SCOS_10 | Oligo aCGH | Probe signal intensity | 23 |
nssv1498405 | copy number gain | OAT_25 | Oligo aCGH | Probe signal intensity | 25 |
nssv1498478 | copy number gain | OAT_75 | Oligo aCGH | Probe signal intensity | 30 |
nssv1498584 | copy number gain | CONTROL_66 | Oligo aCGH | Probe signal intensity | 25 |
nssv1498745 | copy number gain | OAT_82 | Oligo aCGH | Probe signal intensity | 37 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1495847 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1495910 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1496293 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1496495 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1496563 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1496886 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497010 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497038 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497114 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497241 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497242 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497433 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497515 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497574 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497619 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1497775 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498073 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498184 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498202 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498269 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498405 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498478 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498584 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1498745 | Remapped | Perfect | NC_000011.10:g.(57 60747_5764670)_(57 84435_5788809)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,760,747 | 5,764,670 | 5,784,435 | 5,788,809 |
nssv1495847 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1495910 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1496293 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1496495 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1496563 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1496886 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497010 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497038 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497114 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497241 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497242 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497433 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497515 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497574 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497619 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1497775 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498073 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498184 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498202 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498269 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498405 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498478 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498584 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1498745 | Remapped | Perfect | NC_000011.9:g.(578 1977_5785900)_(580 5665_5810039)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,781,977 | 5,785,900 | 5,805,665 | 5,810,039 |
nssv1495847 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1495910 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1496293 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1496495 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1496563 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1496886 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497010 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497038 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497114 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497241 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497242 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497433 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497515 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497574 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497619 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1497775 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498073 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498184 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498202 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498269 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498405 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498478 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498584 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 | ||
nssv1498745 | Submitted genomic | NC_000011.8:g.(573 8553_5742476)_(576 2241_5766615)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,738,553 | 5,742,476 | 5,762,241 | 5,766,615 |