nsv873522
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:106,557
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 720 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 720 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 294 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv873522 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 68,851 | 85,793 | 170,616 | 175,407 |
| nsv873522 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 68,851 | 85,793 | 170,616 | 175,407 |
| nsv873522 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 58,851 | 75,793 | 160,616 | 165,407 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1562547 | copy number gain | MS25627 | SNP array | SNP genotyping analysis | 11 |
| nssv1574181 | copy number gain | IS33526 | SNP array | SNP genotyping analysis | nssv1574179, nssv1574182, nssv1574180 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1562547 | Remapped | Perfect | NC_000002.12:g.(68 851_85793)_(170616 _175407)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 68,851 | 85,793 | 170,616 | 175,407 |
| nssv1574181 | Remapped | Perfect | NC_000002.12:g.(68 851_85793)_(170616 _175407)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 68,851 | 85,793 | 170,616 | 175,407 |
| nssv1562547 | Remapped | Perfect | NC_000002.11:g.(68 851_85793)_(170616 _175407)dup | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 68,851 | 85,793 | 170,616 | 175,407 |
| nssv1574181 | Remapped | Perfect | NC_000002.11:g.(68 851_85793)_(170616 _175407)dup | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 68,851 | 85,793 | 170,616 | 175,407 |
| nssv1562547 | Submitted genomic | NC_000002.10:g.(58 851_75793)_(160616 _165407)dup | NCBI36 (hg18) | NC_000002.10 | Chr2 | 58,851 | 75,793 | 160,616 | 165,407 | ||
| nssv1574181 | Submitted genomic | NC_000002.10:g.(58 851_75793)_(160616 _165407)dup | NCBI36 (hg18) | NC_000002.10 | Chr2 | 58,851 | 75,793 | 160,616 | 165,407 |