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Genotype Selection - Genes

51155
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Association Results 1 - 1 of 1 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 9318 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 19 of 19 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
JPT1Jupiter microtubule associated homolog 1 17 : 75,154,512 - 75,135,243619242
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["17", 75135243, 75154512] ], "markers": { "17": [ ["JPT1", "NC_000017.11", 75135243, 75154512, "Jupiter microtubule associated homolog 1", "ARM2, HN1, HN1A", 51155] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Pulse Wave Analysis rs11656524 intergenic HN1, SUMO2 17 : 75,160,292 7.640 x 10-5 dbGaP phs000338 European
{ "section": "assoc", "summary": "1 - 1 of 1", "mesh": [ "Pulse Wave Analysis" ], "genes": [6613, 51155], "snps": [11656524], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 1 }

Get information.SNPs

1 - 50 of 9318 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2145206582 17 : 75,156,495 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
2 rs2145206550 17 : 75,156,466 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
3 rs2145206533 17 : 75,156,456 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
4 rs2145206406 17 : 75,156,375 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
5 rs2145206377 17 : 75,156,361 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
6 rs2145206083 17 : 75,156,182 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
7 rs2145206067 17 : 75,156,168 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
8 rs2145206064 17 : 75,156,165 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
9 rs2145206034 17 : 75,156,142 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
10 rs2145206015 17 : 75,156,137 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
11 rs2145205848 17 : 75,156,007 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
12 rs2145205780 17 : 75,155,983 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
13 rs2145205768 17 : 75,155,974 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
14 rs2145205652 17 : 75,155,875 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
15 rs2145205641 17 : 75,155,866 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
16 rs2145205590 17 : 75,155,828 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
17 rs2145205575 17 : 75,155,821 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
18 rs2145205483 17 : 75,155,749 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
19 rs2145205407 17 : 75,155,708 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
20 rs2145204973 17 : 75,155,486 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
21 rs2145204763 17 : 75,155,317 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
22 rs2145204752 17 : 75,155,311 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
23 rs2145204654 17 : 75,155,232 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
24 rs2145204530 17 : 75,155,158 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
25 rs2145204518 17 : 75,155,145 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
26 rs2145204491 17 : 75,155,127 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
27 rs2145204473 17 : 75,155,092 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
28 rs2145204429 17 : 75,155,047 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
29 rs2145204411 17 : 75,155,034 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
30 rs2145204171 17 : 75,154,829 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
31 rs2145203799 17 : 75,154,603 2KB_upstream_variant, upstream_transcript_variant JPT1 n/a
32 rs2145203607 17 : 75,154,528 2KB_upstream_variant, upstream_transcript_variant JPT1 Yes
33 rs2145202756 17 : 75,154,252 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant JPT1 Yes
34 rs2145202633 17 : 75,154,194 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
35 rs2145202293 17 : 75,154,030 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
36 rs2145202243 17 : 75,154,011 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
37 rs2145202230 17 : 75,154,004 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
38 rs2145202215 17 : 75,154,002 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
39 rs2145202025 17 : 75,153,918 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
40 rs2145201661 17 : 75,153,763 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
41 rs2145201655 17 : 75,153,762 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
42 rs2145201620 17 : 75,153,752 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
43 rs2145201329 17 : 75,153,619 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
44 rs2145201324 17 : 75,153,618 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
45 rs2145201189 17 : 75,153,575 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
46 rs2145201157 17 : 75,153,566 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
47 rs2145201104 17 : 75,153,539 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
48 rs2145201080 17 : 75,153,518 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 Yes
49 rs2145201045 17 : 75,153,492 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
50 rs2145200777 17 : 75,153,345 upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant JPT1 n/a
{ "section": "SNP", "summary": "1 - 50 of 9318", "genes": [], "retstart": 0, "pageSize": 50, "count": 9318, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gaphttps.ncbi.nlm.nih.gov80gapphegenihttps://https.ncbi.nlm.nih.gov/gaphttps://https.ncbi.nlm.nih.govhttps://https.ncbi.nlm.nih.gov/gap/phegeni/gaphttps://https.ncbi.nlm.nih.gov/gap/phegeni/phegenitrueCE8AF44A79B55701_0496SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap15051155 CE88A03779B55701_0004SID1r9f6EciJU4Ii1eyKzfcJGbgmhJvfsWnVtZg8Qm0xeC5V@CE88A03779B55701_0004SID
1 - 19 of 19 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL14261366322562228122634phs000342phs000363
41FHS_eGene_leadQTLs1011562228122634phs000342phs000363
42A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines808195023345460EGAS00000000137E-MTAB-1428,
E-MTAB-1425
46GTEx_Adipose_Subcutaneous101137023715323phs000424.v6phs000424.v6
49GTEx_Artery_Aorta201224723715323phs000424.v6phs000424.v6
51GTEx_Artery_Tibial101136023715323phs000424.v6phs000424.v6
53GTEx_Brain_Caudate_basal_ganglia101113323715323phs000424.v6phs000424.v6
54GTEx_Brain_Cerebellar_Hemisphere101111423715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus101110223715323phs000424.v6phs000424.v6
60GTEx_Brain_Nucleus_accumbens_basal_ganglia101112423715323phs000424.v6phs000424.v6
64GTEx_Cells_Transformed_fibroblasts101130523715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
73GTEx_Lung101133823715323phs000424.v6phs000424.v6
77GTEx_Pancreas201219423715323phs000424.v6phs000424.v6
79GTEx_Prostate101112023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
84GTEx_Stomach101120223715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
88GTEx_Vagina10119823715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 19 of 19"}
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