Search Summary
Search Criteria
Genotype Selection - Genes
51155
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Search Results
Association Results | 1 - 1 of 1 | Searched by gene IDs retrieved from gene search. |
Genes | 1 - 1 of 1 | Searched by gene names and/or gene IDs. |
SNPs | 1 - 50 of 9318 | Searched by gene symbols retrieved from gene search. |
eQTL Data | 1 - 19 of 19 | Searched by gene IDs retrieved from gene search. |
dbGaP Studies | Retrieving... | Searched by traits retrieved from association results. |
Genome View | Retrieving... |
Search Criteria
Select broad trait category to limit the items shown in the trait selection.
Select trait for search. Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser. This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.
Celiac Disease
Gene Search: CDKAL1
Location: MHC region
Genes
# | Symbol | Description | Location | OMIM | ||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | JPT1 | Jupiter microtubule associated homolog 1 | 17 | : 75,154,512 - 75,135,243 | 619242 | |||||
| ||||||||||
Association Results
# |
Trait |
rs # |
Context |
Gene |
Location |
P-value |
Source |
Study |
Population | PubMed |
|
---|---|---|---|---|---|---|---|---|---|---|---|
1 | Pulse Wave Analysis | rs11656524 | intergenic | HN1, SUMO2 | 17 | : 75,160,292 | 7.640 x 10-5 | dbGaP | phs000338 | European |
SNPs
# | rs# | Location | Function Class | Gene | Diversity | |
---|---|---|---|---|---|---|
1 | rs2145206582 | 17 | : 75,156,495 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
2 | rs2145206550 | 17 | : 75,156,466 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
3 | rs2145206533 | 17 | : 75,156,456 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
4 | rs2145206406 | 17 | : 75,156,375 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
5 | rs2145206377 | 17 | : 75,156,361 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
6 | rs2145206083 | 17 | : 75,156,182 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
7 | rs2145206067 | 17 | : 75,156,168 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
8 | rs2145206064 | 17 | : 75,156,165 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
9 | rs2145206034 | 17 | : 75,156,142 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
10 | rs2145206015 | 17 | : 75,156,137 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
11 | rs2145205848 | 17 | : 75,156,007 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
12 | rs2145205780 | 17 | : 75,155,983 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
13 | rs2145205768 | 17 | : 75,155,974 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
14 | rs2145205652 | 17 | : 75,155,875 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
15 | rs2145205641 | 17 | : 75,155,866 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
16 | rs2145205590 | 17 | : 75,155,828 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
17 | rs2145205575 | 17 | : 75,155,821 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
18 | rs2145205483 | 17 | : 75,155,749 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
19 | rs2145205407 | 17 | : 75,155,708 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
20 | rs2145204973 | 17 | : 75,155,486 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
21 | rs2145204763 | 17 | : 75,155,317 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
22 | rs2145204752 | 17 | : 75,155,311 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
23 | rs2145204654 | 17 | : 75,155,232 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
24 | rs2145204530 | 17 | : 75,155,158 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
25 | rs2145204518 | 17 | : 75,155,145 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
26 | rs2145204491 | 17 | : 75,155,127 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
27 | rs2145204473 | 17 | : 75,155,092 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
28 | rs2145204429 | 17 | : 75,155,047 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
29 | rs2145204411 | 17 | : 75,155,034 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
30 | rs2145204171 | 17 | : 75,154,829 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
31 | rs2145203799 | 17 | : 75,154,603 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | n/a |
32 | rs2145203607 | 17 | : 75,154,528 | 2KB_upstream_variant, upstream_transcript_variant | JPT1 | Yes |
33 | rs2145202756 | 17 | : 75,154,252 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant | JPT1 | Yes |
34 | rs2145202633 | 17 | : 75,154,194 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
35 | rs2145202293 | 17 | : 75,154,030 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
36 | rs2145202243 | 17 | : 75,154,011 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
37 | rs2145202230 | 17 | : 75,154,004 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
38 | rs2145202215 | 17 | : 75,154,002 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
39 | rs2145202025 | 17 | : 75,153,918 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
40 | rs2145201661 | 17 | : 75,153,763 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
41 | rs2145201655 | 17 | : 75,153,762 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
42 | rs2145201620 | 17 | : 75,153,752 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
43 | rs2145201329 | 17 | : 75,153,619 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
44 | rs2145201324 | 17 | : 75,153,618 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
45 | rs2145201189 | 17 | : 75,153,575 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
46 | rs2145201157 | 17 | : 75,153,566 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
47 | rs2145201104 | 17 | : 75,153,539 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
48 | rs2145201080 | 17 | : 75,153,518 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | Yes |
49 | rs2145201045 | 17 | : 75,153,492 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
50 | rs2145200777 | 17 | : 75,153,345 | upstream_transcript_variant, intron_variant, genic_upstream_transcript_variant, 5_prime_UTR_variant | JPT1 | n/a |
eQTL Data
1 - 19 of 19
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{ "section": "eqtl", "summary": "1 - 19 of 19"}