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si:ch73-347e22.8 si:ch73-347e22.8 [ Danio rerio (zebrafish) ]

Gene ID: 100000389, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch73-347e22.8provided by ZNC
Official Full Name
si:ch73-347e22.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8455
See related
Ensembl:ENSDARG00000103322 AllianceGenome:ZFIN:ZDB-GENE-030131-8455
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb12c09; wu:fb12c09
Orthologs
all
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Genomic context

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See si:ch73-347e22.8 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (10938358..10950782)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (11019012..11031857)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene extracellular matrix protein 1a Neighboring gene uncharacterized LOC137488479 Neighboring gene cytosolic phospholipase A2 gamma Neighboring gene microseminoprotein, prostate associated 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Protein Arginine Methyltransferase 6 (Prmt6) Is Essential for Early Zebrafish Development through the Direct Suppression of gadd45αa Stress Sensor Gene. Zhao XX, et al. J Biol Chem, 2016 Jan 1. PMID 26487724, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
tropomyosin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    10938358..10950782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173759.5 → XP_005173816.1  tropomyosin

    UniProtKB/TrEMBL
    A0A0R4ICP4, A0A8M2BL41
    Related
    ENSDARP00000132773.1, ENSDART00000168968.2
    Conserved Domains (1) summary
    TIGR04527
    Location:12 → 137
    mycoplas_twoTM; two transmembrane protein
Nucleotide Protein Strain
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Research Materials