pbldp phenazine biosynthesis-like protein domain containing pseudogene [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pbldpprovided by ZNC
Official Full Name: phenazine biosynthesis-like protein domain containing pseudogeneprovided by ZNC
Primary source: ZFIN:ZDB-GENEP-160808-1
See related: Ensembl:ENSDARG00000094974 AllianceGenome:ZFIN:ZDB-GENEP-160808-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: pbld1; wu:fd52b02; zgc:101129
Summary: Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:: chromosome: 13

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (22843881..22862131, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (22713431..22731681, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables catalytic activity	IEA Inferred from Electronic Annotation more info
enables isomerase activity	IBA Inferred from Biological aspect of Ancestor more info
enables isomerase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: phenazine biosynthesis-like protein domain containing pseudogene

Names: MAWD binding protein-like; phenazine biosynthesis-like protein domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003759.2 → NP_001003759.1 phenazine biosynthesis-like protein domain containing pseudogene

See identical proteins and their annotated locations for NP_001003759.1

Status: PROVISIONAL

Source sequence(s)

BC079517

UniProtKB/TrEMBL

Q6AXI9

Related

ENSDART00000136464.2

Conserved Domains (2) summary

pfam02567
Location:8 → 282

PhzC-PhzF; Phenazine biosynthesis-like protein

cl19724
Location:5 → 281

DAP_epimerase; Diaminopimelate epimerase