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si:ch211-283h6.4 si:ch211-283h6.4 [ Danio rerio (zebrafish) ]

Gene ID: 100001127, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch211-283h6.4provided by ZNC
Official Full Name
si:ch211-283h6.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-154
See related
Ensembl:ENSDARG00000059459 AllianceGenome:ZFIN:ZDB-GENE-060526-154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C2orf68 (chromosome 2 open reading frame 68). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:ch211-283h6.4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (68817034..68826177, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (68046367..68055510, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene hairy-related 1 Neighboring gene hairy and enhancer of split related-7 Neighboring gene ubiquitin specific peptidase 39 Neighboring gene surfactant protein Bb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
UPF0561 protein C2orf68 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114693.1 → NP_001108165.1  UPF0561 protein C2orf68 homolog

    See identical proteins and their annotated locations for NP_001108165.1

    Status: PROVISIONAL

    Source sequence(s)
    BX537304
    UniProtKB/Swiss-Prot
    A3KQ58
    Related
    ENSDARP00000119204.1, ENSDART00000136605.2
    Conserved Domains (1) summary
    pfam10573
    Location:5 → 124
    UPF0561; uncharacterized protein family UPF0561

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    68817034..68826177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A3KQ58.1 GenPept UniProtKB/Swiss-Prot:A3KQ58

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials