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si:ch211-248a14.8 si:ch211-248a14.8 [ Danio rerio (zebrafish) ]

Gene ID: 100001321, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-248a14.8provided by ZNC
Official Full Name
si:ch211-248a14.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-131126-33
See related
Ensembl:ENSDARG00000097693 AllianceGenome:ZFIN:ZDB-GENE-131126-33
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-248a14.8 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (20173830..20184109)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (20154003..20164201)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene actinin, alpha 2b Neighboring gene prolyl 4-hydroxylase, alpha polypeptide I b Neighboring gene ecdysoneless homolog (Drosophila) Neighboring gene gonadotropin-releasing hormone 3 Neighboring gene O-6-methylguanine-DNA methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 35 member D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    20173830..20184109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292981.4 → XP_009291256.1  solute carrier family 35 member D3 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AU55

  2. XM_068214575.1 → XP_068070676.1  solute carrier family 35 member D3 isoform X2

  3. XM_001341307.9 → XP_001341343.4  solute carrier family 35 member D3 isoform X3

    UniProtKB/TrEMBL
    A0A8M1Q1Z0, X1WDL4
    Related
    ENSDARP00000128313.1, ENSDART00000155379.3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394981.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    149028..159686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473093.2 → XP_021328768.1  solute carrier family 35 member D3 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PNZ4

  2. XM_021473094.2 → XP_021328769.1  solute carrier family 35 member D3 isoform X4

    UniProtKB/TrEMBL
    A0A8M9PV99
Nucleotide Protein Strain
Heading Accession and Version

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