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rpz5 rapunzel 5 [ Danio rerio (zebrafish) ]

Gene ID: 100003142, updated on 12-Sep-2024

Summary

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Official Symbol
rpz5provided by ZNC
Official Full Name
rapunzel 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4678
See related
Ensembl:ENSDARG00000075718 AllianceGenome:ZFIN:ZDB-GENE-030131-4678
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd50h12; rapunzel5; wu:fd50h12; zgc:171577
Orthologs
all
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Genomic context

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See rpz5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (46492988..46496293)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (46526272..46529577)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886607 Neighboring gene rapunzel 6 Neighboring gene protein rapunzel-like Neighboring gene rapunzel 3 Neighboring gene rapunzel 4 Neighboring gene transmembrane protein 176l.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Zebrafish RPZ5 Degrades Phosphorylated IRF7 To Repress Interferon Production. Lu LF, et al. J Virol, 2019 Nov 1. PMID 31413136, Free PMC Article
  2. A gain of function mutation causing skeletal overgrowth in the rapunzel mutant. Green J, et al. Dev Biol, 2009 Oct 1. PMID 19632218, Free PMC Article
  3. Β-catenin-dependent control of positional information along the AP body axis in planarians involves a teashirt family member. Reuter H, et al. Cell Rep, 2015 Jan 13. PMID 25558068
  4. Identification of target genes downstream of semaphorin6A/PlexinA2 signaling in zebrafish. Emerson SE, et al. Dev Dyn, 2017 Jul. PMID 28440030, Free PMC Article
  5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC171577

General protein information

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Preferred Names
rapunzel 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110124.1 → NP_001103594.1  rapunzel 5

    See identical proteins and their annotated locations for NP_001103594.1

    Status: PROVISIONAL

    Source sequence(s)
    BC153975
    UniProtKB/TrEMBL
    A8KB57
    Related
    ENSDARP00000096709.4, ENSDART00000105931.5
    Conserved Domains (1) summary
    pfam03938
    Location:54 → 113
    OmpH; Outer membrane protein (OmpH-like)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    46492988..46496293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466571.2 → XP_021322246.1  rapunzel 5 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PJ33, F1R8L3
    Conserved Domains (1) summary
    pfam03938
    Location:54 → 113
    OmpH; Outer membrane protein (OmpH-like)
Nucleotide Protein
Heading Accession and Version

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