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pcdh1g33 protocadherin 1 gamma 33 [ Danio rerio (zebrafish) ]

Gene ID: 100003438, updated on 28-Oct-2024

Summary

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Official Symbol
pcdh1g33provided by ZNC
Official Full Name
protocadherin 1 gamma 33provided by ZNC
Primary source
ZFIN:ZDB-GENE-071004-76
See related
Ensembl:ENSDARG00000099035 AllianceGenome:ZFIN:ZDB-GENE-071004-76
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
pcdh1g5; pcdh1g9; zgc:162322; si:dkey-179g5.8
Summary
Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. Orthologous to several human genes including PCDHGC5 (protocadherin gamma subfamily C, 5). [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

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See pcdh1g33 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (21783213..21820060)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene protocadherin 1 gamma 1 Neighboring gene protocadherin 1 gamma 2 Neighboring gene protocadherin 1 gamma 3 Neighboring gene protocadherin 1 gamma b 2 Neighboring gene protocadherin 1 gamma 9 Neighboring gene protocadherin 1 gamma 11 Neighboring gene protocadherin 1 gamma b 9 Neighboring gene protocadherin gamma-A11-like Neighboring gene protocadherin 1 gamma 18 Neighboring gene protocadherin gamma-C5-like Neighboring gene protocadherin 1 gamma 22 Neighboring gene protocadherin 1 gamma 26 Neighboring gene protocadherin 1 gamma c 5 Neighboring gene protocadherin 1 gamma c 6 Neighboring gene protocadherin 1 gamma 29 Neighboring gene protocadherin 1 gamma 30 Neighboring gene protocadherin 1 gamma 31 Neighboring gene protocadherin 1 gamma 32 Neighboring gene mucin-4 Neighboring gene cerebellin 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An adhesion code ensures robust pattern formation during tissue morphogenesis. Tsai TY, et al. Science, 2020 Oct 2. PMID 33004519, Free PMC Article
  2. Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts. Sullivan C, et al. PLoS One, 2017. PMID 28658311, Free PMC Article
  3. Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation. Zhang T, et al. Genome Res, 2004 Jan. PMID 14672974, Free PMC Article
  4. Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes. Wu Q. Genetics, 2005 Apr. PMID 15744052, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protocadherin 1 gamma 33
Names
protocadherin cluster 1 gamma 5a
protocadherin cluster 1 gamma 9a
protocadherin gamma cluster 1 member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109736.2 → NP_001103206.2  protocadherin 1 gamma 33 precursor

    Status: VALIDATED

    Source sequence(s)
    CR774179
    Related
    ENSDARP00000140627.1, ENSDART00000168899.2
    Conserved Domains (4) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:30 → 112
    Cadherin_2; Cadherin-like
    pfam15974
    Location:819 → 956
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam16492
    Location:692 → 720
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    21783213..21820060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394782.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    50757..87597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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