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rsph1 radial spoke head component 1 [ Danio rerio (zebrafish) ]

Gene ID: 100003444, updated on 17-Sep-2024

Summary

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Official Symbol
rsph1provided by ZNC
Official Full Name
radial spoke head component 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-041008-22
See related
Ensembl:ENSDARG00000102261 AllianceGenome:ZFIN:ZDB-GENE-041008-22
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6909388
Summary
Is expressed in Kupffer's vesicle; forerunner cell group; neural tube; pronephric duct; and spinal cord. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 24. Orthologous to human RSPH1 (radial spoke head component 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rsph1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (16835642..16853541, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (16827930..16845842, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496423 Neighboring gene syntaxin 19 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene F-box and leucine-rich repeat protein 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
radial spoke head 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    16835642..16853541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478871.2 → XP_021334546.1  radial spoke head 1 homolog

    UniProtKB/TrEMBL
    A0A0M3HEM6, A0A8M9QFV1
    Related
    ENSDARP00000135092.1, ENSDART00000160273.3
    Conserved Domains (1) summary
    cl27415
    Location:19 → 143
    COG4642; Uncharacterized conserved protein [Function unknown]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394745.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    12321..30220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304579.4 → XP_009302854.1  radial spoke head 1 homolog

    UniProtKB/TrEMBL
    A0A0M3HEM6, A0A8M9QFV1
    Conserved Domains (1) summary
    cl27415
    Location:19 → 143
    COG4642; Uncharacterized conserved protein [Function unknown]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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