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zbtb3 zinc finger and BTB domain containing 3 [ Danio rerio (zebrafish) ]

Gene ID: 100003975, updated on 12-Sep-2024

Summary

Official Symbol
zbtb3provided by ZNC
Official Full Name
zinc finger and BTB domain containing 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050506-105
See related
Ensembl:ENSDARG00000036235 AllianceGenome:ZFIN:ZDB-GENE-050506-105
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6906516; im:7140697; si:dkey-147f20.3
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB3 (zinc finger and BTB domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See zbtb3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (35405516..35408773)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (35065191..35068459)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene clathrin interactor 1a Neighboring gene LSM11, U7 small nuclear RNA associated Neighboring gene ribonuclease H2, subunit C Neighboring gene tRNA methyltransferase 12 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • FLJ23392

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
im:6906516; zinc finger and BTB domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    35405516..35408773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291211.4XP_009289486.1  zinc finger and BTB domain-containing protein 3

    UniProtKB/TrEMBL
    A0A0R4IWF3, A0A8M3APC5
    Related
    ENSDARP00000140629.1, ENSDART00000171565.2
    Conserved Domains (4) summary
    smart00225
    Location:27133
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:472492
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:16131
    BTB; BTB/POZ domain
    pfam13465
    Location:485509
    zf-H2C2_2; Zinc-finger double domain