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ptx4 pentraxin 4, long [ Danio rerio (zebrafish) ]

Gene ID: 100004372, updated on 27-Mar-2024

Summary

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Official Symbol
ptx4provided by ZNC
Official Full Name
pentraxin 4, longprovided by ZNC
Primary source
ZFIN:ZDB-GENE-120215-70
See related
AllianceGenome:ZFIN:ZDB-GENE-120215-70
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb77c07; wu:fb77c07; si:ch211-157c3.5
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTX4 (pentraxin 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See ptx4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (27641472..27654172)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (27514677..27532313)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene HUWE1 associated protein modifying stress responses a Neighboring gene ubiquitin specific peptidase 7 (herpes virus-associated) Neighboring gene si:ch211-157c3.4 Neighboring gene pentraxin 4 Neighboring gene chloride channel 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
pentraxin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    27641472..27654172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002457780.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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