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zgc:158345 zgc:158345 [ Danio rerio (zebrafish) ]

Gene ID: 100009644, updated on 12-Sep-2024

Summary

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Official Symbol
zgc:158345provided by ZNC
Official Full Name
zgc:158345provided by ZNC
Primary source
ZFIN:ZDB-GENE-070209-268
See related
AllianceGenome:ZFIN:ZDB-GENE-070209-268
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See zgc:158345 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (34337..44733, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (34342..44755, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene dynamin 3b Neighboring gene zinc finger-like gene 2b Neighboring gene tensin-3-like Neighboring gene tensin-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
tensin-3; uncharacterized protein LOC100009644

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    34337..44733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213326.1 → XP_068069427.1  tensin-3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001083013.1: Suppressed sequence

    Description
    NM_001083013.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from rat: Tns3 (GeneID:360980).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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