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si:dkey-286j15.3 si:dkey-286j15.3 [ Danio rerio (zebrafish) ]

Gene ID: 100038796, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-286j15.3provided by ZNC
Official Full Name
si:dkey-286j15.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-635
See related
Ensembl:ENSDARG00000071036 AllianceGenome:ZFIN:ZDB-GENE-060503-635
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:dkey-286j15.3 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (29990448..30000826)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (30041253..30051631)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488969 Neighboring gene uncharacterized LOC137488970 Neighboring gene si:dkey-286j15.1 Neighboring gene stonustoxin subunit beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100038796

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044351.2 → NP_001037816.2  uncharacterized protein LOC100038796

    See identical proteins and their annotated locations for NP_001037816.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL845330
    UniProtKB/TrEMBL
    B7ZVS5, Q1MTG3
    Related
    ENSDARP00000095548.3, ENSDART00000104778.5
    Conserved Domains (1) summary
    cd16040
    Location:18 → 198
    SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

  2. NM_001089576.2 → NP_001083045.2  uncharacterized protein LOC100038796

    See identical proteins and their annotated locations for NP_001083045.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL845330
    UniProtKB/TrEMBL
    B7ZVS5, Q1MTG3
    Related
    ENSDARP00000140428.1, ENSDART00000165313.2
    Conserved Domains (1) summary
    cd16040
    Location:18 → 198
    SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    29990448..30000826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469286.2 → XP_021324961.1  uncharacterized protein LOC100038796 isoform X1

    UniProtKB/TrEMBL
    B7ZVS5, Q1MTG3
    Related
    ENSDARP00000122907.1, ENSDART00000147728.3
    Conserved Domains (1) summary
    cd16040
    Location:18 → 198
    SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395119.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    86846..93707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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