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tmem230b transmembrane protein 230b [ Danio rerio (zebrafish) ]

Gene ID: 100124614, updated on 18-Sep-2024

Summary

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Official Symbol
tmem230bprovided by ZNC
Official Full Name
transmembrane protein 230bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070820-4
See related
Ensembl:ENSDARG00000069674 AllianceGenome:ZFIN:ZDB-GENE-070820-4
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:162251
Summary
Predicted to be involved in synaptic vesicle transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle. Is expressed in several structures, including caudal fin; hindbrain; immature eye; midbrain; and tail bud. Orthologous to human TMEM230 (transmembrane protein 230). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See tmem230b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (4963273..4972966, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (4907011..4916703, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene glutamine amidotransferase class 1 domain containing 3, like Neighboring gene immunoglobulin superfamily, member 9b Neighboring gene adrenoceptor alpha 1Aa Neighboring gene dihydropyrimidinase like 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Igf2bp3 maintains maternal RNA stability and ensures early embryo development in zebrafish. Ren F, et al. Commun Biol, 2020 Mar 3. PMID 32127635, Free PMC Article
  2. Zebrafish Tmem230a cooperates with the Delta/Notch signaling pathway to modulate endothelial cell number in angiogenic vessels. Carra S, et al. J Cell Physiol, 2018 Feb. PMID 28542953
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in synaptic vesicle transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in late endosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in synaptic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transmembrane protein 230b
Names
transmembrane protein 230b delta 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102640.1 → NP_001096110.1  transmembrane protein 230b

    See identical proteins and their annotated locations for NP_001096110.1

    Status: PREDICTED

    Source sequence(s)
    BC151202
    UniProtKB/TrEMBL
    A0A8M6Z7J2, A7E2V0, F1Q969
    Related
    ENSDARP00000092349.3, ENSDART00000101576.4
    Conserved Domains (1) summary
    pfam05915
    Location:78 → 113
    DUF872; Eukaryotic protein of unknown function (DUF872)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    4963273..4972966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017357267.3 → XP_017212756.1  transmembrane protein 230b isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z7J2, A7E2V0, F1Q969
    Conserved Domains (1) summary
    pfam05915
    Location:78 → 113
    DUF872; Eukaryotic protein of unknown function (DUF872)
Nucleotide Protein Strain
Heading Accession and Version

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