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zgc:172014 zgc:172014 [ Danio rerio (zebrafish) ]

Gene ID: 100137116, updated on 12-Sep-2024

Summary

Official Symbol
zgc:172014provided by ZNC
Official Full Name
zgc:172014provided by ZNC
Primary source
ZFIN:ZDB-GENE-080215-22
See related
Ensembl:ENSDARG00000101775 AllianceGenome:ZFIN:ZDB-GENE-080215-22
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

See zgc:172014 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (30775402..30782071)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (30846342..30851590)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene gastrula zinc finger protein xLCGF3.1-like Neighboring gene uncharacterized LOC137490906 Neighboring gene si:dkey-178j11.5 Neighboring gene uncharacterized LOC137490910

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100137116

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114713.1NP_001108185.1  uncharacterized protein LOC100137116

    See identical proteins and their annotated locations for NP_001108185.1

    Status: PREDICTED

    Source sequence(s)
    BC155578
    UniProtKB/TrEMBL
    A9JRA2
    Related
    ENSDARP00000130384.1, ENSDART00000158528.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    30775402..30782071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002458101.2 RNA Sequence