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zgc:175135 zgc:175135 [ Danio rerio (zebrafish) ]

Gene ID: 100137125, updated on 27-Mar-2024

Summary

Official Symbol
zgc:175135provided by ZNC
Official Full Name
zgc:175135provided by ZNC
Primary source
ZFIN:ZDB-GENE-080214-1
See related
Ensembl:ENSDARG00000105499 AllianceGenome:ZFIN:ZDB-GENE-080214-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Acts upstream of or within response to steroid hormone. Is expressed in ovary. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See zgc:175135 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (18053337..18055134)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (17918702..17920499)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene si:ch211-14i3.2 Neighboring gene uncharacterized LOC110440097 Neighboring gene uncharacterized LOC101886644 Neighboring gene RNA pseudouridylate synthase domain-containing protein 4-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within response to steroid hormone IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100137125

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114722.2NP_001108194.2  uncharacterized protein LOC100137125 precursor

    Status: VALIDATED

    Source sequence(s)
    BC158201, BI885357, EH485927
    UniProtKB/TrEMBL
    A0A8M1NFU4, B0BLX6, F1QP18
    Related
    ENSDARP00000070231.5, ENSDART00000075750.7

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    18053337..18055134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)