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btr26 bloodthirsty-related gene family, member 26 [ Danio rerio (zebrafish) ]

Gene ID: 100149795, updated on 28-Oct-2024

Summary

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Official Symbol
btr26provided by ZNC
Official Full Name
bloodthirsty-related gene family, member 26provided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-378
See related
Ensembl:ENSDARG00000105241 AllianceGenome:ZFIN:ZDB-GENE-070705-378
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-218f9.6
Summary
Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to several human genes including TRIM11 (tripartite motif containing 11); TRIM39 (tripartite motif containing 39); and TRIM58 (tripartite motif containing 58). [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

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See btr26 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (4066403..4071777)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (4135448..4140951)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene bloodthirsty-related gene family, member 24 Neighboring gene bloodthirsty-related gene family, member 25 Neighboring gene zgc:173581 Neighboring gene four and a half LIM domains 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Sample Preparation and Analysis of RNASeq-based Gene Expression Data from Zebrafish. Hostelley TL, et al. J Vis Exp, 2017 Oct 27. PMID 29155729, Free PMC Article
  2. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. van der Aa LM, et al. BMC Biol, 2009 Feb 5. PMID 19196451, Free PMC Article
  3. Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish. Boudinot P, et al. PLoS One, 2011. PMID 21789205, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    4066403..4071777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173753.5 → XP_005173810.1  E3 ubiquitin-protein ligase TRIM39 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BL34
    Related
    ENSDART00000163125.2
    Conserved Domains (3) summary
    cd00162
    Location:13 → 57
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:140 → 176
    zf-B_box; B-box zinc finger
    cd13733
    Location:355 → 529
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty

  2. XM_068215227.1 → XP_068071328.1  E3 ubiquitin-protein ligase TRIM39 isoform X2

    Related
    ENSDARP00000133734.1, ENSDART00000162461.2
Nucleotide Protein Strain
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