U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:ch73-103b9.2 si:ch73-103b9.2 [ Danio rerio (zebrafish) ]

Gene ID: 100150067, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
si:ch73-103b9.2provided by ZNC
Official Full Name
si:ch73-103b9.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-199
See related
Ensembl:ENSDARG00000092489 AllianceGenome:ZFIN:ZDB-GENE-070705-199
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:ch73-103b9.2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (29958638..29962545, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (29980245..29984291, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex class II DBB gene Neighboring gene ATM interactor Neighboring gene protein phosphatase 1 regulatory subunit 3E Neighboring gene si:ch211-220f16.2 Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein C16orf46 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128400.1 → NP_001121872.1  uncharacterized protein C16orf46 homolog

    See identical proteins and their annotated locations for NP_001121872.1

    Status: PROVISIONAL

    Source sequence(s)
    CT573202
    UniProtKB/TrEMBL
    A0A8M2B5N6, A5WW45
    Related
    ENSDARP00000113174.1, ENSDART00000140661.3
    Conserved Domains (1) summary
    pfam15032
    Location:29 → 196
    DUF4529; Protein of unknown function (DUF4529)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    29958638..29962545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214702.1 → XP_068070803.1  uncharacterized protein C16orf46 homolog isoform X1

  2. XM_005159182.5 → XP_005159239.1  uncharacterized protein C16orf46 homolog isoform X1

    See identical proteins and their annotated locations for XP_005159239.1

    UniProtKB/TrEMBL
    A0A8M2B5N6, A5WW45
    Conserved Domains (1) summary
    pfam15032
    Location:29 → 196
    DUF4529; Protein of unknown function (DUF4529)

  3. XM_005159181.5 → XP_005159238.1  uncharacterized protein C16orf46 homolog isoform X1

    See identical proteins and their annotated locations for XP_005159238.1

    UniProtKB/TrEMBL
    A0A8M2B5N6, A5WW45
    Conserved Domains (1) summary
    pfam15032
    Location:29 → 196
    DUF4529; Protein of unknown function (DUF4529)

  4. XM_005159183.5 → XP_005159240.1  uncharacterized protein C16orf46 homolog isoform X1

    See identical proteins and their annotated locations for XP_005159240.1

    UniProtKB/TrEMBL
    A0A8M2B5N6, A5WW45
    Conserved Domains (1) summary
    pfam15032
    Location:29 → 196
    DUF4529; Protein of unknown function (DUF4529)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools