U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:dkey-183j2.10 si:dkey-183j2.10 [ Danio rerio (zebrafish) ]

Gene ID: 100151589, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
si:dkey-183j2.10provided by ZNC
Official Full Name
si:dkey-183j2.10provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-729
See related
Ensembl:ENSDARG00000070511 AllianceGenome:ZFIN:ZDB-GENE-130530-729
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ligand-gated monoatomic ion channel activity and signaling receptor activity. Predicted to act upstream of or within monoatomic ion transmembrane transport. Predicted to be located in postsynaptic membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:dkey-183j2.10 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (25736149..25750060)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (25498388..25512447)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene OTU deubiquitinase 5b Neighboring gene MON1 secretory trafficking family member Bb Neighboring gene bromodomain and PHD finger containing, 3a Neighboring gene phospholipase C, eta 2b Neighboring gene v-ski avian sarcoma viral oncogene homolog b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. Takeuchi M, et al. J Comp Neurol, 2017 May 1. PMID 27615194
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ligand-gated monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
  
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
probable glutamate receptor
Names
zmp:0000000726

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    25736149..25750060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479846.2 → XP_021335521.1  probable glutamate receptor

    UniProtKB/TrEMBL
    A0A8M1QHZ3, E7F5R2
    Related
    ENSDARP00000094342.3, ENSDART00000103566.5
    Conserved Domains (1) summary
    cd13685
    Location:28 → 381
    PBP2_iGluR_non_NMDA_like; The ligand-binding domain of non-NMDA (N-methyl-D-aspartate) type ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394822.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    350000..363911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001923942.7 → XP_001923977.1  probable glutamate receptor

    UniProtKB/TrEMBL
    A0A8M1QHZ3, E7F5R2
    Conserved Domains (1) summary
    cd13685
    Location:28 → 381
    PBP2_iGluR_non_NMDA_like; The ligand-binding domain of non-NMDA (N-methyl-D-aspartate) type ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools