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CICP16 capicua transcriptional repressor pseudogene 16 [ Homo sapiens (human) ]

Gene ID: 100420203, updated on 17-Sep-2024

Summary

Official Symbol
CICP16provided by HGNC
Official Full Name
capicua transcriptional repressor pseudogene 16provided by HGNC
Primary source
HGNC:HGNC:38550
See related
AllianceGenome:HGNC:38550
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See CICP16 in Genome Data Viewer
Location:
4q26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (118636994..118638826, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (121942296..121944128, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (119558149..119559981, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr4:119437439-119437560 Neighboring gene centrosomal protein 170 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:119452493-119452992 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:119454234-119454734 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:119454735-119455235 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:119490834-119491031 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21847 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:119513527-119514434 Neighboring gene uncharacterized LOC729218 Neighboring gene RNA, U6 small nuclear 1054, pseudogene Neighboring gene septin 14 pseudogene 4 Neighboring gene uncharacterized LOC124900768 Neighboring gene METTL14 divergent transcript

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022032.2 

    Range
    101..1933
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    118636994..118638826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    121942296..121944128 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)