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CICP15 capicua transcriptional repressor pseudogene 15 [ Homo sapiens (human) ]

Gene ID: 100507648, updated on 17-Sep-2024

Summary

Official Symbol
CICP15provided by HGNC
Official Full Name
capicua transcriptional repressor pseudogene 15provided by HGNC
Primary source
HGNC:HGNC:38549
See related
AllianceGenome:HGNC:38549
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See CICP15 in Genome Data Viewer
Location:
5q35.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181328132..181331896, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181891501..181895266, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180755133..180758897, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16799 Neighboring gene TRIM52 antisense RNA 1 (head to head) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180691856-180692474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180692475-180693092 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:180694171-180694740 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:180694741-180695310 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:180707611-180708313 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180711037-180711557 Neighboring gene RNA, U6 small nuclear 705, pseudogene Neighboring gene uncharacterized LOC100132062 Neighboring gene septin 14 pseudogene 5 Neighboring gene olfactory receptor family 4 subfamily F member 3

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028182.2 

    Range
    101..3865
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181328132..181331896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181891501..181895266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)