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cttnbp2nla CTTNBP2 N-terminal like a [ Danio rerio (zebrafish) ]

Gene ID: 100534706, updated on 27-Mar-2024

Summary

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Official Symbol
cttnbp2nlaprovided by ZNC
Official Full Name
CTTNBP2 N-terminal like aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-140106-51
See related
Ensembl:ENSDARG00000053179 AllianceGenome:ZFIN:ZDB-GENE-140106-51
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human CTTNBP2NL (CTTNBP2 N-terminal like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See cttnbp2nla in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (48206283..48242719)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (48207778..48243835)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 1b Neighboring gene polyhomeotic homolog 2b (Drosophila) Neighboring gene wingless-type MMTV integration site family, member 2Ba Neighboring gene suppression of tumorigenicity 7 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolutionary and Expression Analysis of MOV10 and MOV10L1 Reveals Their Origin, Duplication and Divergence. Yang S, et al. Int J Mol Sci, 2022 Jul 7. PMID 35886872, Free PMC Article
  2. Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes. Liu C, et al. Sci Rep, 2015 Jan 29. PMID 25630924, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CTTNBP2 N-terminal-like protein
Names
zmp:0000001091

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    48206283..48242719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003198835.5 → XP_003198883.2  CTTNBP2 N-terminal-like protein

    UniProtKB/TrEMBL
    A0A8M1RM06, F1Q9J8
    Related
    ENSDARP00000069657.2, ENSDART00000075172.3
    Conserved Domains (2) summary
    pfam09727
    Location:14 → 210
    CortBP2; Cortactin-binding protein-2
    cl19219
    Location:212 → 303
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein Strain
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