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avpr2b.1 arginine vasopressin receptor 2b, tandem duplicate, 1 [ Danio rerio (zebrafish) ]

Gene ID: 100534787, updated on 12-Sep-2024

Summary

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Official Symbol
avpr2b.1provided by ZNC
Official Full Name
arginine vasopressin receptor 2b, tandem duplicate, 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-121023-1
See related
Ensembl:ENSDARG00000076797 AllianceGenome:ZFIN:ZDB-GENE-121023-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
V2B; avpr2b; vtr2ba; avpr2ba; avpr2ba.1; si:dkey-178o16.4
Orthologs
all
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Genomic context

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See avpr2b.1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (43219122..43221524, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (43221651..43224166, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 Neighboring gene leucine rich repeat neuronal 1 Neighboring gene uncharacterized LOC108190497 Neighboring gene ADP-ribosylation factor-like 6 interacting protein 5a Neighboring gene tRNA nucleotidyl transferase, CCA-adding, 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The oxytocin/vasopressin receptor family has at least five members in the gnathostome lineage, inclucing two distinct V2 subtypes. Ocampo Daza D, et al. Gen Comp Endocrinol, 2012 Jan 1. PMID 22057000
  2. The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications. Lagman D, et al. BMC Evol Biol, 2013 Nov 2. PMID 24180662, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables vasopressin receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oxytocin receptor
Names
arginine vasopressin receptor 2b, duplicate a
arginine vasopressin receptor 2b, duplicate a.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    43219122..43221524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003198823.6 → XP_003198871.1  oxytocin receptor

    UniProtKB/TrEMBL
    A0A8M1RF13, E7F1C0
    Related
    ENSDARP00000104279.2, ENSDART00000112239.4
    Conserved Domains (1) summary
    cd15388
    Location:30 → 318
    7tmA_V2R; vasopressin receptor 2, member of the class A family of seven-transmembrane G protein-coupled receptors

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394663.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    176886..180448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471839.2 → XP_021327514.1  oxytocin receptor

    UniProtKB/TrEMBL
    A0A8M1RF13, E7F1C0
    Conserved Domains (1) summary
    cd15388
    Location:30 → 318
    7tmA_V2R; vasopressin receptor 2, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
Heading Accession and Version

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