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LOC100535210 caskin-2 [ Danio rerio (zebrafish) ]

Gene ID: 100535210, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100535210
Gene description
caskin-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See LOC100535210 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336650.1 (77010..82139, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336650.1 (77099..82139, complement)

NW_003336650.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-37 Neighboring gene NHERF family PDZ scaffold protein 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
caskin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NW_003336650.1 Reference GRCz11 Primary Assembly

    Range
    77010..82139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470899.2 → XP_021326574.1  caskin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PNZ0
    Conserved Domains (8) summary
    cd09497
    Location:448 → 513
    SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
    cd09498
    Location:514 → 583
    SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
    cd12063
    Location:284 → 345
    SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
    cd00204
    Location:109 → 241
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:114 → 145
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:223 → 261
    Ank_4; Ankyrin repeats (many copies)
    pfam16632
    Location:1138 → 1199
    Caskin-tail; C-terminal region of Caskin
    pfam16907
    Location:763 → 844
    Caskin-Pro-rich; Proline rich region of Caskin proteins

  2. XM_005174541.5 → XP_005174598.3  caskin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BLR5
    Conserved Domains (9) summary
    cd09497
    Location:448 → 513
    SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
    cd09498
    Location:514 → 584
    SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
    cd12063
    Location:284 → 345
    SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
    cd00204
    Location:109 → 241
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:114 → 145
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:223 → 261
    Ank_4; Ankyrin repeats (many copies)
    pfam16632
    Location:1139 → 1200
    Caskin-tail; C-terminal region of Caskin
    pfam16907
    Location:764 → 845
    Caskin-Pro-rich; Proline rich region of Caskin proteins
    cl27601
    Location:506 → 705
    Pectinesterase
Nucleotide Protein Strain
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