U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rhbdl1 rhomboid, veinlet-like 1 (Drosophila) [ Danio rerio (zebrafish) ]

Gene ID: 100887821, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
rhbdl1provided by ZNC
Official Full Name
rhomboid, veinlet-like 1 (Drosophila)provided by ZNC
Primary source
ZFIN:ZDB-GENE-120529-2
See related
Ensembl:ENSDARG00000087040 AllianceGenome:ZFIN:ZDB-GENE-120529-2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Orthologous to human RHBDL1 (rhomboid like 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rhbdl1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (37568445..37631713)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (37681900..37735964)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene ras homolog family member T2 Neighboring gene H1.0 linker histone Neighboring gene zgc:112496 Neighboring gene WD repeat domain 24

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables serine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
rhomboid-related protein 1
Names
rhomboid-like 1
NP_001254516.1
XP_017209285.1
XP_021325778.1
XP_068073124.1
XP_068073125.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267587.1 → NP_001254516.1  rhomboid-related protein 1

    See identical proteins and their annotated locations for NP_001254516.1

    Status: PROVISIONAL

    Source sequence(s)
    EU925596
    UniProtKB/TrEMBL
    A0A8N7XJN9, E7FCU6, G0KVQ4
    Related
    ENSDARP00000106338.2, ENSDART00000125145.3
    Conserved Domains (1) summary
    pfam01694
    Location:197 → 351
    Rhomboid; Rhomboid family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    37568445..37631713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470103.2 → XP_021325778.1  rhomboid-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PFU4
    Conserved Domains (1) summary
    pfam01694
    Location:163 → 317
    Rhomboid; Rhomboid family

  2. XM_068217023.1 → XP_068073124.1  rhomboid-related protein 1 isoform X2

  3. XM_017353796.3 → XP_017209285.1  rhomboid-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M6YY16

  4. XM_068217024.1 → XP_068073125.1  rhomboid-related protein 1 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.