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LOC100911093 CCA tRNA nucleotidyltransferase 1, mitochondrial-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100911093, updated on 10-Jul-2024

Summary

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Symbol
LOC100911093provided by RGD
Full Name
CCA tRNA nucleotidyltransferase 1, mitochondrial-likeprovided by RGD
Primary source
RGD:6494996
See related
EnsemblRapid:ENSRNOG00000020477 AllianceGenome:RGD:6494996
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
AABR07005533.1
Expression
Biased expression in Heart (RPKM 178.5), Thymus (RPKM 162.6) and 9 other tissues See more
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Genomic context

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See LOC100911093 in Genome Data Viewer
Location:
1q35
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (180154702..180157040, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (170720730..170722745, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (185171373..185173658)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD14 Neighboring gene phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha Neighboring gene ribosomal protein S13 Neighboring gene nucleobindin 2 Neighboring gene RNA, U6 small nuclear 651

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA 3'-terminal CCA addition IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CCA tRNA nucleotidyltransferase 1, mitochondrial-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    180154702..180157040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039101159.2 → XP_038957087.1  CCA tRNA nucleotidyltransferase 1, mitochondrial-like

    UniProtKB/TrEMBL
    A0A8I5ZQ33
    Related
    ENSRNOP00000080338.1, ENSRNOT00000027758.6
    Conserved Domains (1) summary
    COG0617
    Location:40 → 417
    PcnB; tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

  2. XM_039101158.2 → XP_038957086.1  CCA tRNA nucleotidyltransferase 1, mitochondrial-like

    UniProtKB/TrEMBL
    A0A8I5ZQ33
    Conserved Domains (1) summary
    COG0617
    Location:40 → 417
    PcnB; tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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