U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

slco5a1b solute carrier organic anion transporter family member 5A1b [ Danio rerio (zebrafish) ]

Gene ID: 101883455, updated on 28-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
slco5a1bprovided by ZNC
Official Full Name
solute carrier organic anion transporter family member 5A1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-587
See related
Ensembl:ENSDARG00000086104 AllianceGenome:ZFIN:ZDB-GENE-070912-587
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Oatp5a2; slco5a2; si:dkey-7l6.4
Summary
Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See slco5a1b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (42399156..42415930, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (42549738..42566518, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene GTP binding protein 4 Neighboring gene solute carrier organic anion transporter family member 5A1a Neighboring gene extended synaptotagmin-like protein 2a Neighboring gene disco-interacting protein 2 homolog Cb

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Organic anion transporting polypeptides (OATP) in zebrafish (Danio rerio): Phylogenetic analysis and tissue distribution. Popovic M, et al. Comp Biochem Physiol A Mol Integr Physiol, 2010 Mar. PMID 19931635
  2. The Role of ARF6 in Biliary Atresia. Ningappa M, et al. PLoS One, 2015. PMID 26379158, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
solute carrier organic anion transporter family member 5A1b

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001353347.1 → NP_001340276.1  solute carrier organic anion transporter family member 5A1b precursor

    Status: VALIDATED

    Source sequence(s)
    BX005044
    UniProtKB/TrEMBL
    A0A8M2BIS1
    Related
    ENSDARP00000116625.1, ENSDART00000142489.3
    Conserved Domains (2) summary
    pfam14948
    Location:62 → 113
    RESP18; RESP18 domain
    cl27169
    Location:291 → 350
    ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    42399156..42415930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials