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si:dkey-197j19.5 si:dkey-197j19.5 [ Danio rerio (zebrafish) ]

Gene ID: 101883682, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-197j19.5provided by ZNC
Official Full Name
si:dkey-197j19.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-633
See related
Ensembl:ENSDARG00000096949 AllianceGenome:ZFIN:ZDB-GENE-131121-633
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human EFCAB12 (EF-hand calcium binding domain 12). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:dkey-197j19.5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (40038708..40044010, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (40041941..40046597, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b Neighboring gene uncharacterized LOC101883484 Neighboring gene si:dkey-197j19.6 Neighboring gene urocanate hydratase 1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 4b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
EF-hand calcium-binding domain-containing protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    40038708..40044010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166096.5 → XP_005166153.2  EF-hand calcium-binding domain-containing protein 12 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BDL0
    Related
    ENSDARP00000128758.1, ENSDART00000154347.2

  2. XM_009302589.4 → XP_009300864.1  EF-hand calcium-binding domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A8M3ATK4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials