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nitr3r.1l novel immune-type receptor 3, related 1-like [ Danio rerio (zebrafish) ]

Gene ID: 101885312, updated on 12-Sep-2024

Summary

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Official Symbol
nitr3r.1lprovided by ZNC
Official Full Name
novel immune-type receptor 3, related 1-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-364
See related
Ensembl:ENSDARG00000103866 AllianceGenome:ZFIN:ZDB-GENE-030616-364
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nitr3r.1; si:dz213m14.2; si:busm1-213m14.2
Orthologs
all
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Genomic context

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See nitr3r.1l in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17356378..17357237)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17104284..17105264)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 75-like Neighboring gene si:busm1-169i8.11 Neighboring gene uncharacterized LOC110438757 Neighboring gene novel immune-type receptor 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ancestral TCDD Exposure Induces Multigenerational Histologic and Transcriptomic Alterations in Gonads of Male Zebrafish. Meyer DN, et al. Toxicol Sci, 2018 Aug 1. PMID 29788325, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E-selectin; macrophage mannose receptor 1
Names
immune-type receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    17356378..17357237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477729.2 → XP_021333404.1  macrophage mannose receptor 1

    UniProtKB/TrEMBL
    A0A8M9Q8D2, F1R5F6, Q5VTP6
    Related
    ENSDARP00000063628.6, ENSDART00000063629.7
    Conserved Domains (1) summary
    cl02432
    Location:21 → 132
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394681.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    129010..129804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166663.5 → XP_005166720.2  E-selectin

    UniProtKB/TrEMBL
    A0A8M2BE28
    Conserved Domains (1) summary
    cl02432
    Location:21 → 132
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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