prrt4a proline rich transmembrane protein 4a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: prrt4aprovided by ZNC
Official Full Name: proline rich transmembrane protein 4aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-140106-210
See related: Ensembl:ENSDARG00000088343 AllianceGenome:ZFIN:ZDB-GENE-140106-210
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: prrt4
Summary: Predicted to be located in membrane. Orthologous to human PRRT4 (proline rich transmembrane protein 4). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 18

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (8845222..8856735, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (8886837..8903024, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: proline-rich transmembrane protein 4

Names: zmp:0000001250

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007129.7 Reference GRCz11 Primary Assembly

Range

8845222..8856735 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005159019.5 → XP_005159076.1 proline-rich transmembrane protein 4

UniProtKB/TrEMBL

A0A8M2B5K9, E7F7P8

Related

ENSDARP00000108434.1, ENSDART00000126331.3

Conserved Domains (1) summary

cl02571
Location:666 → 829

RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018395005.1 Reference GRCz11 ALT_DRER_TU_1

Range

103798..115311 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021473236.2 → XP_021328911.1 proline-rich transmembrane protein 4

UniProtKB/TrEMBL

A0A8M2B5K9, E7F7P8

Conserved Domains (1) summary

cl02571
Location:666 → 829

RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

Reference GRCz11 ALT_DRER_TU_2

Genomic

NW_018395334.1 Reference GRCz11 ALT_DRER_TU_2

Range

114025..131651 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021474389.2 → XP_021330064.1 proline-rich transmembrane protein 4

UniProtKB/TrEMBL

A0A8M9PYT1

Conserved Domains (1) summary

cl02571
Location:668 → 831

RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.