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gata6 GATA binding protein 6 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103396347, updated on 11-Mar-2024

Summary

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Gene symbol
gata6
Gene description
GATA binding protein 6
See related
Ensembl:ENSCSEG00000011433
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 20 NC_024326.1 (8081393..8087098)

Chromosome 20 - NC_024326.1Genomic Context describing neighboring genes Neighboring gene histamine receptor H4 Neighboring gene oxysterol-binding protein-related protein 1-like Neighboring gene uncharacterized LOC103396348 Neighboring gene Cdk5 and Abl enzyme substrate 1 Neighboring gene uncharacterized LOC112488685 Neighboring gene Niemann-Pick disease, type C1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024326.1 Chromosome 20 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization and expression profiles of GATA6 in tongue sole (Cynoglossus semilaevis). Liu J, et al. Comp Biochem Physiol B Biochem Mol Biol, 2016 Aug. PMID 27040526

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GATA6 might influence the gonad development and reproduction of C. semilaevis
    Title: Molecular characterization and expression profiles of GATA6 in tongue sole (Cynoglossus semilaevis).
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor GATA-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024326.1 Reference Cse_v1.0 Primary Assembly

    Range
    8081393..8087098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025066043.1 → XP_024921811.1  transcription factor GATA-6

    UniProtKB/TrEMBL
    A0A1C8FS61, A0A3P8VU40
    Related
    ENSCSEP00000017829.1, ENSCSET00000018049.1
    Conserved Domains (2) summary
    cd00202
    Location:350 → 401
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:112 → 283
    GATA-N; GATA-type transcription activator, N-terminal
Nucleotide Protein
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