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lima1b LIM domain and actin binding 1b [ Danio rerio (zebrafish) ]

Gene ID: 108191643, updated on 28-Oct-2024

Summary

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Official Symbol
lima1bprovided by ZNC
Official Full Name
LIM domain and actin binding 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4116
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-4116
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc74a06; im:7155904; wu:fc74a06
Summary
Is expressed in otic placode; posterior lateral line primordium; and pronephros. Orthologous to human LIMA1 (LIM domain and actin binding 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See lima1b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (2329648..2377644)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (2306117..2311174)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1a Neighboring gene zinc finger protein 740a Neighboring gene insulin-like growth factor binding protein 6a Neighboring gene phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation of a conditional lima1a allele in zebrafish using the FLEx switch technology. Jungke P, et al. Genesis, 2016 Jan. PMID 26572123
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LIM domain and actin-binding protein 1
Names
LIM domain and actin binding 1
LIM domain and actin-binding protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    2329648..2377644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479690.2 → XP_021335365.1  LIM domain and actin-binding protein 1

    UniProtKB/TrEMBL
    A0A8M9QLS4
    Conserved Domains (3) summary
    cd09485
    Location:660 → 712
    LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
    cl25732
    Location:898 → 1138
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:82 → 520
    Atrophin-1; Atrophin-1 family

  2. XM_068224254.1 → XP_068080355.1  LIM domain and actin-binding protein 1

Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases