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RBM20 RNA binding motif protein 20 [ Bos indicus (zebu cattle) ]

Gene ID: 109579172, updated on 14-Mar-2024

Summary

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Gene symbol
RBM20
Gene description
RNA binding motif protein 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See RBM20 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 26 NC_032675.1 (31584322..31780976)

Chromosome 26 - NC_032675.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate proteoglycan 5 pseudogene Neighboring gene structural maintenance of chromosomes 3 Neighboring gene uncharacterized LOC109578942 Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032675.1 Chromosome 26 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032675.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    31584322..31780976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019988725.1 → XP_019844284.1  RNA-binding protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A6P5E1R0
    Conserved Domains (4) summary
    smart00451
    Location:1142 → 1176
    ZnF_U1; U1-like zinc finger
    cd12685
    Location:518 → 593
    RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
    cl26464
    Location:146 → 361
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:684 → 927
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_019988727.1 → XP_019844286.1  RNA-binding protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A6P5E165
    Conserved Domains (4) summary
    smart00451
    Location:1086 → 1120
    ZnF_U1; U1-like zinc finger
    cd12685
    Location:462 → 537
    RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
    cl26464
    Location:90 → 305
    Atrophin-1; Atrophin-1 family
    cl26511
    Location:628 → 871
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_019988728.1 → XP_019844287.1  RNA-binding protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A6P5E4J4
    Conserved Domains (4) summary
    smart00451
    Location:1013 → 1047
    ZnF_U1; U1-like zinc finger
    cd12685
    Location:389 → 464
    RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
    pfam10243
    Location:577 → 778
    MIP-T3; Microtubule-binding protein MIP-T3
    cl26464
    Location:17 → 232
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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