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Smox Smad on X [ Daphnia magna ]

Gene ID: 116928768, updated on 3-Jul-2024

Summary

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Gene symbol
Smox
Gene description
Smad on X
See related
EnsemblRapid:LOC116928768
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
Orthologs
fruit fly all
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Genomic context

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See Smox in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG8 NC_059189.1 (2846065..2849900)
100 previous assembly ASM399081v1 (GCF_003990815.1) LG8 NC_046181.1 (2772499..2776356)

Linkage Group LG8 - NC_059189.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116928777 Neighboring gene spectrin beta chain, non-erythrocytic 5 kst Neighboring gene translin Neighboring gene hemocyte protein-glutamine gamma-glutamyltransferase Neighboring gene uncharacterized LOC116928776

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Species-specific transcriptomic responses in Daphnia magna exposed to a bio-plastic production intermediate. Swart E, et al. Environ Pollut, 2019 Sep. PMID 31158668
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables I-SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of heteromeric SMAD protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mothers against decapentaplegic homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059189.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    2846065..2849900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032935865.2 → XP_032791756.1  mothers against decapentaplegic homolog 3

    UniProtKB/TrEMBL
    A0A164X3L0
    Related
    XP_032791756.1, XM_032935865.2
    Conserved Domains (2) summary
    cd10491
    Location:7 → 128
    MH1_SMAD_2_3; N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3
    cd10985
    Location:252 → 442
    MH2_SMAD_2_3; C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3

RNA

  1. XR_004397373.2 RNA Sequence

    Related
    XR_004397373.2
Nucleotide Protein
Heading Accession and Version

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