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LOC125280859 gastrula zinc finger protein XlCGF57.1-like [ Megalobrama amblycephala (Wuchang bream) ]

Gene ID: 125280859, updated on 30-Nov-2023

Summary

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Gene symbol
LOC125280859
Gene description
gastrula zinc finger protein XlCGF57.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Megalobrama amblycephala
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Megalobrama
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Genomic context

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See LOC125280859 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
18
Annotation release Status Assembly LG Location
100 current ASM1881202v1 (GCF_018812025.1) LG1 NC_063044.1 (8592344..9908812)

Linkage Group LG1 - NC_063044.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 585A-like Neighboring gene uncharacterized LOC125243862 Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene hydroperoxide isomerase ALOXE3-like Neighboring gene galectin-3-binding protein A-like Neighboring gene galectin-3-binding protein A-like Neighboring gene galectin 3 binding protein, tandem duplicate 3 Neighboring gene galectin-3-binding protein B-like Neighboring gene ubiquitin specific peptidase 36 Neighboring gene TIMP metallopeptidase inhibitor 2b Neighboring gene transmembrane channel-like protein 6 Neighboring gene uncharacterized LOC125280852 Neighboring gene heterogeneous nuclear ribonucleoprotein A0 Neighboring gene synaptogyrin 2a Neighboring gene calcium activated nucleotidase 1a Neighboring gene uncharacterized LOC125243901 Neighboring gene myeloid-associated differentiation marker-like protein 2 Neighboring gene alpha-2B adrenergic receptor-like Neighboring gene aerolysin-like protein Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene centromere protein X Neighboring gene notum, palmitoleoyl-protein carboxylesterase a Neighboring gene E3 SUMO-protein ligase ZBED1-like Neighboring gene pyrroline-5-carboxylate reductase 1a Neighboring gene uncharacterized LOC125243873 Neighboring gene uncharacterized LOC125243842 Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene uncharacterized LOC125243783 Neighboring gene uncharacterized LOC125243740 Neighboring gene uncharacterized LOC125243896 Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene uncharacterized LOC125243472 Neighboring gene uncharacterized LOC125243923 Neighboring gene zinc finger protein 850-like Neighboring gene microfibril-associated glycoprotein 4-like Neighboring gene uncharacterized LOC125243233 Neighboring gene tripartite motif-containing protein 16-like Neighboring gene stonustoxin subunit alpha-like Neighboring gene verrucotoxin subunit beta-like Neighboring gene zinc finger protein 239-like Neighboring gene zinc finger protein 239-like Neighboring gene uncharacterized LOC125243856

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_063044.1 Chromosome LG1 Reference ASM1881202v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like; zinc finger protein 208-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Megalobrama amblycephala Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1881202v1 Primary Assembly

Genomic

  1. NC_063044.1 Reference ASM1881202v1 Primary Assembly

    Range
    8592344..9908812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048151736.1 → XP_048007693.1  zinc finger protein 208-like isoform X1

  2. XM_048151744.1 → XP_048007701.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

  3. XM_048151753.1 → XP_048007710.1  gastrula zinc finger protein XlCGF57.1-like isoform X2

  4. XM_048151761.1 → XP_048007718.1  gastrula zinc finger protein XlCGF57.1-like isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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