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Source database (GenBank or RefSeq) File type

ASM1881202v1

Organism name:

Megalobrama amblycephala (Wuchang bream)

Isolate:

DHTTF-2021

Sex:

female

BioSample:

SAMN18522313

BioProject:

PRJNA343584

Submitter:

Huazhong Agricultural University

Date:

2021/06/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018812025.1 (latest)

RefSeq assembly accession:

GCF_018812025.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAGTWI01

Assembly method:

Platanus v. 1.2.4; MECAT v. 1.0

Expected final version:

yes

Genome coverage:

25.0x

Sequencing technology:

PacBio RSII

IDs: 10270291 [UID] 27306988 [GenBank] 33123398 [RefSeq]

See Genome Information for Megalobrama amblycephala

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018812025.1	≠	GCF_018812025.1	ASM1881202v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,109,888,616
Total ungapped length	1,107,975,095
Gaps between scaffolds	0
Number of scaffolds	243
Scaffold N50	42,265,598
Scaffold L50	11
Number of contigs	1,334
Contig N50	2,576,066
Contig L50	109
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	243

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM032034.1	=	NC_063044.1	0
Linkage Group LG2	CM032035.1	=	NC_063045.1	0
Linkage Group LG3	CM032036.1	=	NC_063046.1	0
Linkage Group LG4	CM032037.1	=	NC_063047.1	0
Linkage Group LG5	CM032038.1	=	NC_063048.1	0
Linkage Group LG6	CM032039.1	=	NC_063049.1	0
Linkage Group LG7	CM032040.1	=	NC_063050.1	0
Linkage Group LG8	CM032041.1	=	NC_063051.1	0
Linkage Group LG9	CM032042.1	=	NC_063052.1	0
Linkage Group LG10	CM032043.1	=	NC_063053.1	0
Linkage Group LG11	CM032044.1	=	NC_063054.1	0
Linkage Group LG12	CM032045.1	=	NC_063055.1	0
Linkage Group LG13	CM032046.1	=	NC_063056.1	0
Linkage Group LG14	CM032047.1	=	NC_063057.1	0
Linkage Group LG15	CM032048.1	=	NC_063058.1	0
Linkage Group LG16	CM032049.1	=	NC_063059.1	0
Linkage Group LG17	CM032050.1	=	NC_063060.1	0
Linkage Group LG18	CM032051.1	=	NC_063061.1	0
Linkage Group LG19	CM032052.1	=	NC_063062.1	0
Linkage Group LG20	CM032053.1	=	NC_063063.1	0
Linkage Group LG21	CM032054.1	=	NC_063064.1	0
Linkage Group LG22	CM032055.1	=	NC_063065.1	0
Linkage Group LG23	CM032056.1	=	NC_063066.1	0
Linkage Group LG24	CM032057.1	=	NC_063067.1	0
unplaced	n/a	n/a	n/a	218

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,109,871,993	242	1,107,958,472	42,265,598	1,091
Linkage Group LG1	75,861,420	1	75,588,537	75,861,420	155
Linkage Group LG2	62,787,994	1	62,664,992	62,787,994	64
Linkage Group LG3	62,690,366	1	62,576,626	62,690,366	51
Linkage Group LG4	56,486,944	1	56,421,368	56,486,944	37
Linkage Group LG5	42,119,227	1	42,061,258	42,119,227	39
Linkage Group LG6	46,565,926	1	46,499,931	46,565,926	39
Linkage Group LG7	58,601,665	1	58,544,396	58,601,665	41
Linkage Group LG8	36,453,122	1	36,443,122	36,453,122	10
Linkage Group LG9	44,064,265	1	43,973,744	44,064,265	43
Linkage Group LG10	38,506,410	1	38,481,379	38,506,410	14
Linkage Group LG11	40,946,424	1	40,903,459	40,946,424	33
Linkage Group LG12	40,861,861	1	40,832,839	40,861,861	28
Linkage Group LG13	42,265,598	1	42,211,294	42,265,598	26
Linkage Group LG14	52,872,649	1	52,739,337	52,872,649	87
Linkage Group LG15	36,685,446	1	36,601,403	36,685,446	48
Linkage Group LG16	44,269,591	1	44,203,998	44,269,591	51
Linkage Group LG17	48,951,756	1	48,860,968	48,951,756	57
Linkage Group LG18	40,112,171	1	40,052,173	40,112,171	36
Linkage Group LG19	40,955,115	1	40,936,339	40,955,115	19
Linkage Group LG20	35,213,252	1	35,183,905	35,213,252	23
Linkage Group LG21	33,380,896	1	33,302,977	33,380,896	40
Linkage Group LG22	33,882,743	1	33,834,865	33,882,743	35
Linkage Group LG23	28,479,863	1	28,458,493	28,479,863	14
Linkage Group LG24	35,366,420	1	35,299,651	35,366,420	38
unplaced	31,490,869	218	31,281,418	271,002	63

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ASM1881202v1

See Genome Information for Megalobrama amblycephala

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear