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NPIPA6 nuclear pore complex interacting protein family, member A6 [ Homo sapiens (human) ]

Gene ID: 131675794, updated on 16-Jun-2024

Summary

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Official Symbol
NPIPA6provided by HGNC
Official Full Name
nuclear pore complex interacting protein family, member A6provided by HGNC
Primary source
HGNC:HGNC:27893
See related
Ensembl:ENSG00000183889
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPIPA5L
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Genomic context

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See NPIPA6 in Genome Data Viewer
Location:
16p13.11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (16331877..16350585)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (16340281..16358999)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene PKD1P1-NPIPA5L readthrough Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16418032-16418834 Neighboring gene microRNA 6511a-2 Neighboring gene microRNA 6770-2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16455057-16455754 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16462718-16463630 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16464602-16465502 Neighboring gene microRNA 6511a-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16468943-16469444 Neighboring gene nuclear pore complex interacting protein family member A7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Readthrough LOC131696449

Readthrough gene: LOC131696449, Included gene: PKD1P1

General protein information

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Preferred Names
nuclear pore complex-interacting protein family member A6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423836.1 → NP_001410765.1  nuclear pore complex-interacting protein family member A6

    Status: PROVISIONAL

    Source sequence(s)
    AC138969
    UniProtKB/Swiss-Prot
    A0A0B4J1W7, P0DXC3
    UniProtKB/TrEMBL
    A0A0J9YW05
    Related
    ENSP00000370908.2, ENST00000381497.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    16331877..16350585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    1991058..2009775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    16340281..16358999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DXC3.1 GenPept UniProtKB/Swiss-Prot:P0DXC3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases