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LOC131696449 PKD1P1-NPIPA5L readthrough [ Homo sapiens (human) ]

Gene ID: 131696449, updated on 10-Oct-2023

Summary

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Gene symbol
LOC131696449
Gene description
PKD1P1-NPIPA5L readthrough
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PKD1P1-NPIPA5L
Summary
This gene represents readthrough transcription between the transcribed pseudogene PKD1P1 (GeneID:339044) and the downstream protein-coding member of the NPIPA gene family, GeneID:131675794 (NPIPA5L). The readthrough transcripts are not predicted to encode a protein. [provided by RefSeq, Aug 2023]
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Genomic context

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See LOC131696449 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (16310134..16350608)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (16315687..16359022)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371099 Neighboring gene microRNA 3670-2 Neighboring gene microRNA 3180-2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16410465-16411346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16411347-16412229 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16417107-16417962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16418032-16418834 Neighboring gene microRNA 6511a-2 Neighboring gene microRNA 6770-2 Neighboring gene nuclear pore complex interacting protein family, member A6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16455057-16455754 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16462718-16463630 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16464602-16465502 Neighboring gene microRNA 6511a-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:16468943-16469444 Neighboring gene nuclear pore complex interacting protein family member A7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036447.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138969

  2. NR_172900.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138969

  3. NR_172901.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138969

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    16310134..16350608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    1968105..2009798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    16315687..16359022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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