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Lrrfip1 leucine rich repeat (in FLII) interacting protein 1 [ Mus musculus (house mouse) ]

Gene ID: 16978, updated on 2-Nov-2024

Summary

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Official Symbol
Lrrfip1provided by MGI
Official Full Name
leucine rich repeat (in FLII) interacting protein 1provided by MGI
Primary source
MGI:MGI:1342770
See related
Ensembl:ENSMUSG00000026305 AllianceGenome:MGI:1342770
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fliiap1
Summary
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Acts upstream of or within positive regulation of NF-kappaB transcription factor activity. Predicted to be located in cytosol and plasma membrane. Is expressed in several structures, including brain; genitourinary system; gut; hemolymphoid system gland; and liver and biliary system. Orthologous to human LRRFIP1 (LRR binding FLII interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in bladder adult (RPKM 22.2), placenta adult (RPKM 10.6) and 26 other tissues See more
Orthologs
human all
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Genomic context

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See Lrrfip1 in Genome Data Viewer
Location:
1 D; 1 46.03 cM
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (90924652..91056666)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (90996930..91128944)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene prolactin releasing hormone Neighboring gene RAB17, member RAS oncogene family Neighboring gene STARR-positive B cell enhancer ABC_E4334 Neighboring gene STARR-positive B cell enhancer ABC_E3290 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:92961823-92961976 Neighboring gene predicted gene, 35443 Neighboring gene RNA binding motif protein 44 Neighboring gene proteasome (prosome, macropain) 28 subunit, alpha pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Leucine-rich repeat (in Flightless I) interacting protein-1 regulates a rapid type I interferon response. Bagashev A, et al. J Interferon Cytokine Res, 2010 Nov. PMID 20586614, Free PMC Article
  2. The cytosolic nucleic acid sensor LRRFIP1 mediates the production of type I interferon via a beta-catenin-dependent pathway. Yang P, et al. Nat Immunol, 2010 Jun. PMID 20453844
  3. Higher LRRFIP1 expression in glioblastoma multiforme is associated with better response to teniposide, a type II topoisomerase inhibitor. Li WQ, et al. Biochem Biophys Res Commun, 2014 Apr 18. PMID 24690174
  4. Identification of the binding partners for flightless I, A novel protein bridging the leucine-rich repeat and the gelsolin superfamilies. Liu YT, et al. J Biol Chem, 1998 Apr 3. PMID 9525888
  5. Functions of gelsolin: motility, signaling, apoptosis, cancer. Kwiatkowski DJ. Curr Opin Cell Biol, 1999 Feb. PMID 10047530

See all (36) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Experiments in nude mice demonstrated better response of LRRFIP1 overexpressing glioblastoma multiforme xenografts to teniposide.
    Title: Higher LRRFIP1 expression in glioblastoma multiforme is associated with better response to teniposide, a type II topoisomerase inhibitor.
  2. regulates a rapid type I interferon response
    Title: Leucine-rich repeat (in Flightless I) interacting protein-1 regulates a rapid type I interferon response.
  3. LRRFIP1 and its downstream partner beta-catenin constitute another coactivator pathway for IRF3-mediated production of type I interferon
    Title: The cytosolic nucleic acid sensor LRRFIP1 mediates the production of type I interferon via a beta-catenin-dependent pathway.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription repressor activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within positive regulation of NF-kappaB transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of NF-kappaB transcription factor activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
leucine-rich repeat flightless-interacting protein 1
Names
FLAP (FLI LRR associated protein)
FLI-LRR-associated protein 1
H186 FLAP
LRR FLII-interacting protein 1
flap-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111311.1 → NP_001104781.1  leucine-rich repeat flightless-interacting protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001104781.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest protein (isoform 1).
    Source sequence(s)
    AK077637, AK134120, AK162191, AV024479, BB709810
    Consensus CDS
    CCDS48320.1
    UniProtKB/Swiss-Prot
    O70323, Q3TS94, Q3UZ39
    Related
    ENSMUSP00000095254.4, ENSMUST00000097649.10
    Conserved Domains (1) summary
    pfam09738
    Location:42 → 258
    DUF2051; Double stranded RNA binding protein (DUF2051)

  2. NM_001111312.1 → NP_001104782.1  leucine-rich repeat flightless-interacting protein 1 isoform 3

    See identical proteins and their annotated locations for NP_001104782.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple differences in the coding region and contains different segments for both UTRs, compared to variant 1. The resulting protein (isoform 3) is shorter and has distinct N- and C-termini when it is compared to isoform 1.
    Source sequence(s)
    AF045573, AI452149, AK041162, BC145642, CJ154753
    Consensus CDS
    CCDS48319.1
    UniProtKB/TrEMBL
    G5E8E1, Q8BLV4
    Related
    ENSMUSP00000065850.7, ENSMUST00000068116.13
    Conserved Domains (1) summary
    pfam09738
    Location:52 → 352
    DUF2051; Double stranded RNA binding protein (DUF2051)

  3. NM_001310732.1 → NP_001297661.1  leucine-rich repeat flightless-interacting protein 1 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has multiple differences in the 3' UTR and in the coding region, but maintains the reading frame compared to variant 1. The resulting isoform (4) has a shorter and distinct C-terminus and lacks several internal segments compared to isoform 1.
    Source sequence(s)
    AC162883
    Consensus CDS
    CCDS78647.1
    UniProtKB/TrEMBL
    A0A087WPK3, A6H5U5
    Related
    ENSMUSP00000139811.2, ENSMUST00000189617.3
    Conserved Domains (2) summary
    COG1340
    Location:385 → 655
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    cl12057
    Location:385 → 463
    Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain

  4. NM_008515.4 → NP_032541.1  leucine-rich repeat flightless-interacting protein 1 isoform 2

    See identical proteins and their annotated locations for NP_032541.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences in the coding region and contains a different 3' UTR, compared to variant 1. The resulting protein (isoform 2) is shorter and has a distinct C-terminus when it is compared to isoform 1.
    Source sequence(s)
    AF045573, AI452149, AK077637, BC145642, BY739242
    Consensus CDS
    CCDS35662.1
    UniProtKB/TrEMBL
    E9Q9T1
    Related
    ENSMUSP00000095255.4, ENSMUST00000097650.10
    Conserved Domains (1) summary
    COG1340
    Location:350 → 620
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    90924652..91056666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529209.4 → XP_006529272.1  leucine-rich repeat flightless-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A6H5U5
    Related
    ENSMUSP00000139497.2, ENSMUST00000185531.7
    Conserved Domains (3) summary
    TIGR04211
    Location:398 → 486
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:260 → 613
    LRRFIP; LRRFIP family
    pfam11932
    Location:629 → 688
    DUF3450; Protein of unknown function (DUF3450)

  2. XM_017318960.2 → XP_017174449.1  leucine-rich repeat flightless-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A6H5U5
    Conserved Domains (2) summary
    pfam09738
    Location:260 → 582
    LRRFIP; LRRFIP family
    pfam11932
    Location:598 → 657
    DUF3450; Protein of unknown function (DUF3450)

  3. XM_017318958.2 → XP_017174447.1  leucine-rich repeat flightless-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A6H5U5
    Conserved Domains (3) summary
    TIGR04211
    Location:374 → 462
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:260 → 589
    LRRFIP; LRRFIP family
    pfam11932
    Location:605 → 664
    DUF3450; Protein of unknown function (DUF3450)

  4. XM_017318961.2 → XP_017174450.1  leucine-rich repeat flightless-interacting protein 1 isoform X4

    UniProtKB/TrEMBL
    A6H5U5
    Conserved Domains (2) summary
    pfam09738
    Location:245 → 574
    LRRFIP; LRRFIP family
    pfam11932
    Location:590 → 649
    DUF3450; Protein of unknown function (DUF3450)

  5. XM_017318969.2 → XP_017174458.1  leucine-rich repeat flightless-interacting protein 1 isoform X5

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:223 → 552
    LRRFIP; LRRFIP family
    pfam11932
    Location:568 → 627
    DUF3450; Protein of unknown function (DUF3450)

  6. XM_017318974.2 → XP_017174463.1  leucine-rich repeat flightless-interacting protein 1 isoform X6

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:197 → 526
    LRRFIP; LRRFIP family
    pfam11932
    Location:542 → 601
    DUF3450; Protein of unknown function (DUF3450)

  7. XM_017318999.2 → XP_017174488.1  leucine-rich repeat flightless-interacting protein 1 isoform X9

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:197 → 495
    LRRFIP; LRRFIP family
    pfam11932
    Location:511 → 570
    DUF3450; Protein of unknown function (DUF3450)

  8. XM_017319017.2 → XP_017174506.1  leucine-rich repeat flightless-interacting protein 1 isoform X14

    Conserved Domains (2) summary
    pfam09738
    Location:197 → 464
    LRRFIP; LRRFIP family
    pfam11932
    Location:480 → 539
    DUF3450; Protein of unknown function (DUF3450)

  9. XM_036162412.1 → XP_036018305.1  leucine-rich repeat flightless-interacting protein 1 isoform X13

    Conserved Domains (2) summary
    pfam09738
    Location:175 → 466
    LRRFIP; LRRFIP family
    pfam11932
    Location:482 → 541
    DUF3450; Protein of unknown function (DUF3450)

  10. XM_017318996.2 → XP_017174485.1  leucine-rich repeat flightless-interacting protein 1 isoform X8

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:175 → 504
    LRRFIP; LRRFIP family
    pfam11932
    Location:520 → 579
    DUF3450; Protein of unknown function (DUF3450)

  11. XM_017319004.2 → XP_017174493.1  leucine-rich repeat flightless-interacting protein 1 isoform X12

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:175 → 473
    LRRFIP; LRRFIP family
    pfam11932
    Location:489 → 548
    DUF3450; Protein of unknown function (DUF3450)

  12. XM_036162414.1 → XP_036018307.1  leucine-rich repeat flightless-interacting protein 1 isoform X16

    Conserved Domains (2) summary
    pfam09738
    Location:175 → 442
    LRRFIP; LRRFIP family
    pfam11932
    Location:458 → 517
    DUF3450; Protein of unknown function (DUF3450)

  13. XM_036162407.1 → XP_036018300.1  leucine-rich repeat flightless-interacting protein 1 isoform X7

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:184 → 513
    LRRFIP; LRRFIP family
    pfam11932
    Location:529 → 588
    DUF3450; Protein of unknown function (DUF3450)

  14. XM_036162413.1 → XP_036018306.1  leucine-rich repeat flightless-interacting protein 1 isoform X15

    Conserved Domains (2) summary
    pfam09738
    Location:162 → 453
    LRRFIP; LRRFIP family
    pfam11932
    Location:469 → 528
    DUF3450; Protein of unknown function (DUF3450)

  15. XM_017319000.2 → XP_017174489.1  leucine-rich repeat flightless-interacting protein 1 isoform X10

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:162 → 491
    LRRFIP; LRRFIP family
    pfam11932
    Location:507 → 566
    DUF3450; Protein of unknown function (DUF3450)

  16. XM_036162428.1 → XP_036018321.1  leucine-rich repeat flightless-interacting protein 1 isoform X23

    Conserved Domains (2) summary
    pfam09738
    Location:52 → 375
    LRRFIP; LRRFIP family
    pfam11932
    Location:391 → 450
    DUF3450; Protein of unknown function (DUF3450)

  17. XM_030251813.1 → XP_030107673.1  leucine-rich repeat flightless-interacting protein 1 isoform X22

    UniProtKB/TrEMBL
    Q8BLV4
    Conserved Domains (2) summary
    pfam09738
    Location:52 → 379
    LRRFIP; LRRFIP family
    pfam11932
    Location:395 → 454
    DUF3450; Protein of unknown function (DUF3450)

  18. XM_030251811.1 → XP_030107671.1  leucine-rich repeat flightless-interacting protein 1 isoform X17

    Conserved Domains (2) summary
    pfam09738
    Location:52 → 417
    LRRFIP; LRRFIP family
    pfam11932
    Location:433 → 492
    DUF3450; Protein of unknown function (DUF3450)

  19. XM_030251812.1 → XP_030107672.1  leucine-rich repeat flightless-interacting protein 1 isoform X20

    Conserved Domains (2) summary
    pfam09738
    Location:52 → 386
    LRRFIP; LRRFIP family
    pfam11932
    Location:402 → 461
    DUF3450; Protein of unknown function (DUF3450)

  20. XM_030251816.1 → XP_030107676.1  leucine-rich repeat flightless-interacting protein 1 isoform X25

    UniProtKB/TrEMBL
    Q8BLV4
    Conserved Domains (2) summary
    pfam09738
    Location:52 → 355
    LRRFIP; LRRFIP family
    pfam11932
    Location:371 → 430
    DUF3450; Protein of unknown function (DUF3450)

  21. XM_030251823.1 → XP_030107683.1  leucine-rich repeat flightless-interacting protein 1 isoform X32

    Conserved Domains (2) summary
    pfam09738
    Location:52 → 415
    LRRFIP; LRRFIP family
    pfam11932
    Location:431 → 490
    DUF3450; Protein of unknown function (DUF3450)

  22. XM_030251821.1 → XP_030107681.1  leucine-rich repeat flightless-interacting protein 1 isoform X31

    UniProtKB/TrEMBL
    Q8BLV4
    Conserved Domains (2) summary
    pfam09738
    Location:52 → 384
    LRRFIP; LRRFIP family
    pfam11932
    Location:400 → 459
    DUF3450; Protein of unknown function (DUF3450)

  23. XM_030251824.1 → XP_030107684.1  leucine-rich repeat flightless-interacting protein 1 isoform X33

    Conserved Domains (2) summary
    pfam09738
    Location:52 → 391
    LRRFIP; LRRFIP family
    pfam11932
    Location:407 → 466
    DUF3450; Protein of unknown function (DUF3450)

  24. XM_030251814.1 → XP_030107674.1  leucine-rich repeat flightless-interacting protein 1 isoform X24

    UniProtKB/TrEMBL
    Q8BLV4
    Conserved Domains (2) summary
    pfam09738
    Location:52 → 360
    LRRFIP; LRRFIP family
    pfam11932
    Location:376 → 435
    DUF3450; Protein of unknown function (DUF3450)

  25. XM_006529216.3 → XP_006529279.1  leucine-rich repeat flightless-interacting protein 1 isoform X29

    See identical proteins and their annotated locations for XP_006529279.1

    UniProtKB/TrEMBL
    Q8BLV4
    Conserved Domains (2) summary
    pfam09738
    Location:52 → 329
    LRRFIP; LRRFIP family
    pfam11932
    Location:345 → 404
    DUF3450; Protein of unknown function (DUF3450)

  26. XM_036162410.1 → XP_036018303.1  leucine-rich repeat flightless-interacting protein 1 isoform X11

    UniProtKB/TrEMBL
    E9Q9T1
    Conserved Domains (2) summary
    pfam09738
    Location:152 → 481
    LRRFIP; LRRFIP family
    pfam11932
    Location:497 → 556
    DUF3450; Protein of unknown function (DUF3450)

  27. XM_036162419.1 → XP_036018312.1  leucine-rich repeat flightless-interacting protein 1 isoform X19

    Conserved Domains (2) summary
    pfam09738
    Location:98 → 396
    LRRFIP; LRRFIP family
    pfam11932
    Location:412 → 471
    DUF3450; Protein of unknown function (DUF3450)

  28. XM_036162433.1 → XP_036018326.1  leucine-rich repeat flightless-interacting protein 1 isoform X27

    Conserved Domains (2) summary
    pfam09738
    Location:42 → 345
    LRRFIP; LRRFIP family
    pfam11932
    Location:361 → 420
    DUF3450; Protein of unknown function (DUF3450)

  29. XM_036162434.1 → XP_036018327.1  leucine-rich repeat flightless-interacting protein 1 isoform X28

    UniProtKB/TrEMBL
    Q8BLV4
    Conserved Domains (2) summary
    pfam09738
    Location:42 → 343
    LRRFIP; LRRFIP family
    pfam11932
    Location:359 → 418
    DUF3450; Protein of unknown function (DUF3450)

  30. XM_006529214.2 → XP_006529277.1  leucine-rich repeat flightless-interacting protein 1 isoform X21

    See identical proteins and their annotated locations for XP_006529277.1

    Conserved Domains (2) summary
    pfam09738
    Location:42 → 381
    LRRFIP; LRRFIP family
    pfam11932
    Location:397 → 456
    DUF3450; Protein of unknown function (DUF3450)

  31. XM_036162432.1 → XP_036018325.1  leucine-rich repeat flightless-interacting protein 1 isoform X26

    Conserved Domains (2) summary
    pfam09738
    Location:42 → 350
    LRRFIP; LRRFIP family
    pfam11932
    Location:366 → 425
    DUF3450; Protein of unknown function (DUF3450)

  32. XM_006529215.2 → XP_006529278.1  leucine-rich repeat flightless-interacting protein 1 isoform X30

    Conserved Domains (2) summary
    pfam09738
    Location:42 → 319
    LRRFIP; LRRFIP family
    pfam11932
    Location:335 → 394
    DUF3450; Protein of unknown function (DUF3450)

  33. XM_036162418.1 → XP_036018311.1  leucine-rich repeat flightless-interacting protein 1 isoform X18

    Conserved Domains (2) summary
    pfam09738
    Location:47 → 400
    LRRFIP; LRRFIP family
    pfam11932
    Location:416 → 475
    DUF3450; Protein of unknown function (DUF3450)

RNA

  1. XR_004940657.1 RNA Sequence

  2. XR_004940659.1 RNA Sequence

  3. XR_004940661.1 RNA Sequence

  4. XR_004940660.1 RNA Sequence

  5. XR_004940663.1 RNA Sequence

  6. XR_004940664.1 RNA Sequence

  7. XR_004940667.1 RNA Sequence

  8. XR_004940666.1 RNA Sequence

  9. XR_004940670.1 RNA Sequence

  10. XR_004940665.1 RNA Sequence

  11. XR_004940669.1 RNA Sequence

  12. XR_004940668.1 RNA Sequence

  13. XR_004940658.1 RNA Sequence

  14. XR_004940662.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UZ39.2 GenPept UniProtKB/Swiss-Prot:Q3UZ39

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