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nitr1a novel immune-type receptor 1a [ Danio rerio (zebrafish) ]

Gene ID: 170994, updated on 28-Oct-2024

Summary

Official Symbol
nitr1aprovided by ZNC
Official Full Name
novel immune-type receptor 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-020225-15
See related
Ensembl:ENSDARG00000069848 AllianceGenome:ZFIN:ZDB-GENE-020225-15
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nitr1; nitr1.18; nitr1.19; nitr1.30; nitr1.60; nitr1.64; nitr1a_1; nitr1a_2; SI:dZ169I8.3; si:dz186f8.4
Orthologs
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Genomic context

See nitr1a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17456686..17458631)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17204713..17206658)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 3d Neighboring gene novel immune-type receptor 2a Neighboring gene novel immune-type receptor 2b Neighboring gene novel immune-type receptor 1b Neighboring gene novel immune-type receptor 1c

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
novel immune-type receptor 1a
Names
immune-type receptor
novel immune-type receptor 1
novel immune-type receptor 1.18
novel immune-type receptor 1.19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007219.1NP_001007220.1  novel immune-type receptor 1a precursor

    See identical proteins and their annotated locations for NP_001007220.1

    Status: PROVISIONAL

    Source sequence(s)
    AL591391
    UniProtKB/TrEMBL
    A0A8M1N324, F1Q872, Q5VTQ6
    Related
    ENSDARP00000103339.3, ENSDART00000113472.4
    Conserved Domains (2) summary
    smart00410
    Location:147243
    IG_like; Immunoglobulin like
    pfam07686
    Location:147244
    V-set; Immunoglobulin V-set domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    17456686..17458631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394681.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    235287..237232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)