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pgp-4 P-GlycoProtein related [ Caenorhabditis elegans ]

Gene ID: 181327, updated on 2-Nov-2024

Summary

Official Symbol
pgp-4
Official Full Name
P-GlycoProtein related
Primary source
WormBase:WBGene00003998
Locus tag
CELE_F42E11.1
See related
AllianceGenome:WB:WBGene00003998
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ATPase-coupled transmembrane transporter activity and efflux transmembrane transporter activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing and stress response to cadmium ion. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in body wall musculature; excretory cell; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); cholestasis (multiple); drug dependence (multiple); and human immunodeficiency virus infectious disease (multiple). Orthologous to several human genes including ABCB1 (ATP binding cassette subfamily B member 1); ABCB11 (ATP binding cassette subfamily B member 11); and ABCB4 (ATP binding cassette subfamily B member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See pgp-4 in Genome Data Viewer
Location:
chromosome: X
Exon count:
16
Sequence:
Chromosome: X; NC_003284.9 (11357816..11364050)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Multidrug resistance protein pgp-3 Neighboring gene ncRNA Neighboring gene Protein tweety homolog 1 Neighboring gene Brp/Blh family beta-carotene 15,15'-monooxygenase

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables ATPase-coupled transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables efflux transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to chemical IEA
Inferred from Electronic Annotation
more info
 
involved_in stress response to cadmium ion IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
P-GlycoProtein related
NP_001257142.1
  • Product from WormBase gene class pgp;
    Confirmed by transcript evidence
NP_001257143.1
  • Product from WormBase gene class pgp;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11357816..11364050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001270214.5NP_001257143.1  P-GlycoProtein related [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257143.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D3KFS6
    Conserved Domains (3) summary
    cd03249
    Location:10271264
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    PTZ00265
    Location:541262
    PTZ00265; multidrug resistance protein (mdr1); Provisional
    pfam00664
    Location:51324
    ABC_membrane; ABC transporter transmembrane region
  2. NM_001270213.3NP_001257142.1  P-GlycoProtein related [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001257142.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20331
    Conserved Domains (3) summary
    cd03249
    Location:10411278
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    PTZ00265
    Location:681276
    PTZ00265; multidrug resistance protein (mdr1); Provisional
    pfam00664
    Location:65338
    ABC_membrane; ABC transporter transmembrane region