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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008208.2 RefSeqGene
- Range
-
5001..41452
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_400
mRNA and Protein(s)
-
NM_001406506.1 → NP_001393435.1 desmocollin-2 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC012417, KF573685
- Consensus CDS
-
CCDS92447.1
- UniProtKB/TrEMBL
- A0A3B3ISU0, Q63HM4
- Related
- ENSP00000518963.1, ENST00000715724.1
-
NM_001406507.1 → NP_001393436.1 desmocollin-2 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC012417, KF573685
- UniProtKB/TrEMBL
-
Q63HM4
- Related
- ENSP00000519012.1, ENST00000713709.1
-
NM_004949.5 → NP_004940.1 desmocollin-2 isoform Dsc2b preproprotein
See identical proteins and their annotated locations for NP_004940.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (Dsc2b, also known as DGIII) contains an additional exon at the 3' end compared to transcript variant Dsc2a. This results in a frame-shift and a shorter isoform (Dsc2b) with a distinct C-terminus compared to isoform Dsc2a.
- Source sequence(s)
-
AC012417, BC063291, BE350090, DC382631, X56807
- Consensus CDS
-
CCDS11893.1
- UniProtKB/TrEMBL
- A8K2P8, A9X9K9, A9X9L0
- Related
- ENSP00000251081.6, ENST00000251081.8
- Conserved Domains (3) summary
-
- cd11304
Location:247 → 351
- Cadherin_repeat; Cadherin tandem repeat domain
- smart01055
Location:31 → 111
- Cadherin_pro; Cadherin prodomain like
- pfam00028
Location:360 → 463
- Cadherin; Cadherin domain
-
NM_024422.6 → NP_077740.1 desmocollin-2 isoform Dsc2a preproprotein
See identical proteins and their annotated locations for NP_077740.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (Dsc2a, also known as DGII) encodes the longer isoform (Dsc2a).
- Source sequence(s)
-
AC012417, BC063291, BE350090, DC382631, X56807
- Consensus CDS
-
CCDS11892.1
- UniProtKB/Swiss-Prot
-
Q02487
- UniProtKB/TrEMBL
- A8K2P8, A9X9K9, A9X9L0
- Related
- ENSP00000280904.6, ENST00000280904.11
- Conserved Domains (4) summary
-
- cd11304
Location:247 → 351
- Cadherin_repeat; Cadherin tandem repeat domain
- smart01055
Location:31 → 111
- Cadherin_pro; Cadherin prodomain like
- pfam00028
Location:360 → 463
- Cadherin; Cadherin domain
- pfam01049
Location:852 → 896
- Cadherin_C; Cadherin cytoplasmic region
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000018.10 Reference GRCh38.p14 Primary Assembly
- Range
-
31058840..31102421 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060942.1 Alternate T2T-CHM13v2.0
- Range
-
31249110..31292671 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)