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chtb-2 CHiTin Binding domain (ChtBD2) containing [ Caenorhabditis elegans ]

Gene ID: 184907, updated on 2-Nov-2024

Summary

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Official Symbol
chtb-2
Official Full Name
CHiTin Binding domain (ChtBD2) containing
Primary source
WormBase:WBGene00017754
Locus tag
CELE_F23F12.8
See related
AllianceGenome:WB:WBGene00017754
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chtb-2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
11
Sequence:
Chromosome: III; NC_003281.10 (6483218..6489314)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 8 Neighboring gene ncRNA Neighboring gene putative 26S proteasome regulatory subunit 6B Neighboring gene Serpentine receptor class beta-11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
CHiTin Binding domain (ChtBD2) containing
NP_498427.2
  • Partially confirmed by transcript evidence;
    Product from WormBase gene class chtb

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    6483218..6489314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066026.3 → NP_498427.2  CHiTin Binding domain (ChtBD2) containing [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498427.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P46503, P46504, Q45EL6
    Conserved Domains (4) summary
    smart00494
    Location:692 → 744
    ChtBD2; Chitin-binding domain type 2
    COG1340
    Location:305 → 620
    COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
    cd16269
    Location:414 → 430
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:303 → 450
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P46504.2

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