U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

oca3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539872, updated on 11-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
oca3
Primary source
PomBase:SPBC15C4.01c
Locus tag
SPOM_SPBC15C4.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
emc2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003423.3 (2236433..2237798, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene triglyceride lipase-cholesterol esterase Neighboring gene mitochondrial ribosomal protein subunit S45 Neighboring gene SAGA complex subunit Spt8 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mitochondrial UbiB/ABC kinase -like family membrane protein implicted in mitochondrial ergosterol and phospholipid homeostasis Cqd2 Neighboring gene Rab geranylgeranyltransferase escort protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  2. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
contributes_to membrane insertase activity IC
Inferred by Curator
more info
  
Process Evidence Code Pubs
involved_in protein insertion into ER membrane IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of EMC complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cell division site HDA PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TPR repeat-containing protein Oca3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2236433..2237798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021829.3 → NP_595921.2  TPR repeat-containing protein Oca3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595921.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60110
    Conserved Domains (2) summary
    sd00006
    Location:140 → 167
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:140 → 207
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials