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mid1ip1a MID1 interacting protein 1a [ Danio rerio (zebrafish) ]

Gene ID: 30600, updated on 12-Sep-2024

Summary

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Official Symbol
mid1ip1aprovided by ZNC
Official Full Name
MID1 interacting protein 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-81
See related
Ensembl:ENSDARG00000041051 AllianceGenome:ZFIN:ZDB-GENE-990415-81
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
g12; wu:fj32f05
Summary
Predicted to be involved in regulation of lipid biosynthetic process. Predicted to be located in cytoplasm; microtubule; and nucleus. Predicted to be active in cytosol. Is expressed in brain. Orthologous to human MID1IP1 (MID1 interacting protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See mid1ip1a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (30263190..30264415, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (30452444..30453669, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene si:dkey-100n23.4 Neighboring gene si:dkey-100n23.5 Neighboring gene ornithine transcarbamylase Neighboring gene retinitis pigmentosa GTPase regulator a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transient up-regulation of a novel member of Spot 14 family in androgen-stimulated rat prostate. Nishi N, et al. Biochim Biophys Acta, 2008 Jul-Aug. PMID 18505691
  2. aura (mid1ip1l) regulates the cytoskeleton at the zebrafish egg-to-embryo transition. Eno C, et al. Development, 2016 May 1. PMID 26965374, Free PMC Article
  3. RNA-sequencing analysis of TCDD-induced responses in zebrafish liver reveals high relatedness to in vivo mammalian models and conserved biological pathways. Li ZH, et al. PLoS One, 2013. PMID 24204792, Free PMC Article
  4. Global identification of SMAD2 target genes reveals a role for multiple co-regulatory factors in zebrafish early gastrulas. Liu Z, et al. J Biol Chem, 2011 Aug 12. PMID 21669877, Free PMC Article
  5. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Kassahn KS, et al. Genome Res, 2009 Aug. PMID 19439512, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in regulation of lipid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
mid1-interacting protein 1A
Names
etID309730.9
gastrulation specific protein
gastrulation-specific protein G12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131335.1 → NP_571410.1  mid1-interacting protein 1A

    Status: PROVISIONAL

    Source sequence(s)
    U27121
    UniProtKB/Swiss-Prot
    P47805
    UniProtKB/TrEMBL
    B2GQW8
    Related
    ENSDARP00000060149.3, ENSDART00000060150.5
    Conserved Domains (1) summary
    pfam07084
    Location:2 → 146
    Spot_14; Thyroid hormone-inducible hepatic protein Spot 14

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    30263190..30264415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P47805.1 GenPept UniProtKB/Swiss-Prot:P47805

Gene LinkOut

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